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Author Details

Mihaly Varadi
European Bioinformatics Institute
2014
32
15
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37933859AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences.Nucleic Acids Res2024
38015445EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023.Nucleic Acids Res2024
36382391The impact of AlphaFold Protein Structure Database on the fields of life sciences.Proteomics2023
38085238PDBImages: a command-line tool for automated macromolecular structure visualization.Bioinformatics2023
37850517Challenges in bridging the gap between protein structure prediction and functional interpretation.Proteins2023
38042830PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank.J Cheminform2023
38040737Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data.Sci Data2023
37045837Unified access to up-to-date residue-level annotations from UniProtKB and other biological databases for PDB data.Sci Data2023
36807079The opportunities and challenges posed by the new generation of deep learning-based protein structure predictors.Curr Opin Struct Biol2023
36828268ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.J Mol Biol2023
34791371AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models.Nucleic Acids Res2022
364488473D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources.Gigascience2022
36173162PDBe and PDBe-KB: Providing high-quality, up-to-date and integrated resources of macromolecular structures to support basic and applied research and education.Protein Sci2022
36012140Comprehensive Collection and Prediction of ABC Transmembrane Protein Structures in the AI Era of Structural Biology.Int J Mol Sci2022
33348379The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies.Brief Bioinform2021
34301175PDBeCIF: an open-source mmCIF/CIF parsing and processing package.BMC Bioinformatics2021
34081107PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data.Bioinformatics2021
33305318PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins.Nucleic Acids Res2021
32238831Interaction between the scaffold proteins CBP by IQGAP1 provides an interface between gene expression and cytoskeletal activity.Sci Rep2020
31691821PDBe: improved findability of macromolecular structure data in the PDB.Nucleic Acids Res2020
29040693AmyPro: a database of proteins with validated amyloidogenic regions.Nucleic Acids Res2018
29126160PDBe: towards reusable data delivery infrastructure at protein data bank in Europe.Nucleic Acids Res2018
28680062Linking functions: an additional role for an intrinsically disordered linker domain in the transcriptional coactivator CBP.Sci Rep2017
28319173Affinity purification of human m-calpain through an intrinsically disordered inhibitor, calpastatin.PLoS One2017
26789760Just a Flexible Linker? The Structural and Dynamic Properties of CBP-ID4 Revealed by NMR Spectroscopy.Biophys J2016
26582925Start2Fold: a database of hydrogen/deuterium exchange data on protein folding and stability.Nucleic Acids Res2016
25968230DisCons: a novel tool to quantify and classify evolutionary conservation of intrinsic protein disorder.BMC Bioinformatics2015
26439842Functional Advantages of Conserved Intrinsic Disorder in RNA-Binding Proteins.PLoS One2015
26387108The Protein Ensemble Database.Adv Exp Med Biol2015
26301226Computational approaches for inferring the functions of intrinsically disordered proteins.Front Mol Biosci2015
24174539pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins.Nucleic Acids Res2014
24507778Predicting the predictive power of IDP ensembles.Structure2014
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Collaborators

Sameer Velankar
European Bioinformatics Institute
Co-authored papers 18
Peter Tompa
VIB-VUB Center for Structural Biology
Co-authored papers 13
Nurul Nadzirin
Co-authored papers 5
Aleksandras Gutmanas
European Bioinformatics Institute
Co-authored papers 4
Gerard J Kleywegt
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 4
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University College London, Institute of Structural and Molecular Biology
Co-authored papers 4
James Tolchard
European Bioinformatics Institute
Co-authored papers 4
Mainak Guharoy
Co-authored papers 3
Jose M Dana
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Dmitri I Svergun
King's College London BHF Centre for Research Excellence
Co-authored papers 3
Ian Sillitoe
University College London
Co-authored papers 3
Torsten Schwede
University of Basel
Co-authored papers 2
Silvio C E Tosatto
University of Padova
Co-authored papers 2
Ewan Birney
European Bioinformatics Institute
Co-authored papers 2
Damiano Piovesan
University of Padova
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Rita Pancsa
Institute of Enzymology, HUN-REN Research Centre for Natural Sciences
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Stefan Bienert
University of Basel
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Typhaine Paysan-Lafosse
Co-authored papers 2
Julie D Forman-Kay
Hospital for Sick Children
Co-authored papers 2
Gerardo Tauriello
University of Basel
Co-authored papers 2
Stephen K Burley
The State University of New Jersey
Co-authored papers 1
Vladimir N Uversky
Morsani College of Medicine, University of South Florida
Co-authored papers 1
Augustin ????dek
Co-authored papers 1
Neeladri Sen
Institute of Structural and Molecular Biology, University College London
Co-authored papers 1
David Baker
University of Washington
Co-authored papers 1
Benjamin Webb
University of California san francisco
Co-authored papers 1
Sylvie Ricard-Blum
ICBMS UMR CNRS 5246, University Lyon 1
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Michele Vendruscolo
University of Cambridge
Co-authored papers 1
Alan Keith Dunker
Center for Computational Biology, Indiana University School of Medicine
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