Author details

Full Name

Brian D Aevermann

Affiliation

J. Craig Venter Institute

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37598867	Cross-Comparison of Inflammatory Skin Disease Transcriptomics Identifies PTEN as a Pathogenic Disease Classifier in Cutaneous Lupus Erythematosus.	J Invest Dermatol	2024
37598867	Cross-Comparison of Inflammatory Skin Disease Transcriptomics Identifies PTEN as a Pathogenic Disease Classifier in Cutaneous Lupus Erythematosus.	J Invest Dermatol	2024
36693887	Brain Data Standards - A method for building data-driven cell-type ontologies.	Sci Data	2023
37390046	A guide to the BRAIN Initiative Cell Census Network data ecosystem.	PLoS Biol	2023
36693887	Brain Data Standards - A method for building data-driven cell-type ontologies.	Sci Data	2023
37311768	Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain.	Sci Rep	2023
37117232	Author Correction: Brain Data Standards - A method for building data-driven cell-type ontologies.	Sci Data	2023
37390046	A guide to the BRAIN Initiative Cell Census Network data ecosystem.	PLoS Biol	2023
37117232	Author Correction: Brain Data Standards - A method for building data-driven cell-type ontologies.	Sci Data	2023
37311768	Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain.	Sci Rep	2023
34893913	The genome and preliminary single-nuclei transcriptome of Lemna minuta reveals mechanisms of invasiveness.	Plant Physiol	2022
35705694	Cell type matching in single-cell RNA-sequencing data using FR-Match.	Sci Rep	2022
36018232	FastMix: a versatile data integration pipeline for cell type-specific biomarker inference.	Bioinformatics	2022
36149937	Machine learning for cell type classification from single nucleus RNA sequencing data.	PLoS One	2022
35319013	Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.	Nature	2022
34893913	The genome and preliminary single-nuclei transcriptome of Lemna minuta reveals mechanisms of invasiveness.	Plant Physiol	2022
35705694	Cell type matching in single-cell RNA-sequencing data using FR-Match.	Sci Rep	2022
36149937	Machine learning for cell type classification from single nucleus RNA sequencing data.	PLoS One	2022
36018232	FastMix: a versatile data integration pipeline for cell type-specific biomarker inference.	Bioinformatics	2022
35319013	Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.	Nature	2022
33249453	FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test.	Brief Bioinform	2021
34088715	A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing.	Genome Res	2021
33249453	FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test.	Brief Bioinform	2021
34616062	Comparative cellular analysis of motor cortex in human, marmoset and mouse.	Nature	2021
34777332	Machine Learning-Based Single Cell and Integrative Analysis Reveals That Baseline mDC Predisposition Correlates With Hepatitis B Vaccine Antibody Response.	Front Immunol	2021
34616062	Comparative cellular analysis of motor cortex in human, marmoset and mouse.	Nature	2021
34777332	Machine Learning-Based Single Cell and Integrative Analysis Reveals That Baseline mDC Predisposition Correlates With Hepatitis B Vaccine Antibody Response.	Front Immunol	2021
34088715	A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing.	Genome Res	2021
32127543	Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons.	Nat Commun	2020
32127543	Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons.	Nat Commun	2020
33250895	Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults.	Front Immunol	2020
33140061	Integrated Single-Cell Atlases Reveal an Oral SARS-CoV-2 Infection and Transmission Axis.	medRxiv	2020
33140061	Integrated Single-Cell Atlases Reveal an Oral SARS-CoV-2 Infection and Transmission Axis.	medRxiv	2020
33250895	Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults.	Front Immunol	2020
31435019	Conserved cell types with divergent features in human versus mouse cortex.	Nature	2019
31435019	Conserved cell types with divergent features in human versus mouse cortex.	Nature	2019
29590361	Cell type discovery using single-cell transcriptomics: implications for ontological representation.	Hum Mol Genet	2018
30586455	Single-nucleus and single-cell transcriptomes compared in matched cortical cell types.	PLoS One	2018
30150662	Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type.	Nat Neurosci	2018
29590361	Cell type discovery using single-cell transcriptomics: implications for ontological representation.	Hum Mol Genet	2018
30150662	Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type.	Nat Neurosci	2018
30586455	Single-nucleus and single-cell transcriptomes compared in matched cortical cell types.	PLoS One	2018
27679478	Influenza Research Database: An integrated bioinformatics resource for influenza virus research.	Nucleic Acids Res	2017
29322913	Cell type discovery and representation in the era of high-content single cell phenotyping.	BMC Bioinformatics	2017
27897007	PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX.	Pac Symp Biocomput	2017
27679478	Influenza Research Database: An integrated bioinformatics resource for influenza virus research.	Nucleic Acids Res	2017
29322913	Cell type discovery and representation in the era of high-content single cell phenotyping.	BMC Bioinformatics	2017
27897007	PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX.	Pac Symp Biocomput	2017
26890679	Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons.	Nat Protoc	2016
26890679	Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons.	Nat Protoc	2016

1 - 50 of 58

Rhonda Bacher

University of Florida

Career Start Year 2016

Number of shared co-authors 0

Genevieve L Stein-O'Brien

Johns Hopkins School of Medicine

Career Start Year 2014

Number of shared co-authors 0

Lukas M Weber

Johns Hopkins Bloomberg School of Public Health

Career Start Year 2014

Number of shared co-authors 0

Stephanie C Hicks

Johns Hopkins Bloomberg School of Public Health

Career Start Year 2011

Number of shared co-authors 2

Elana J Fertig

Johns Hopkins University School of Medicine

Career Start Year 2010

Number of shared co-authors 0

Owen J L Rackham

Duke-National University of Singapore

Career Start Year 2010

Number of shared co-authors 2

Kathleen M Fisch

Center for Computational Biology and Bioinformatics, University of California

Career Start Year 2009

Number of shared co-authors 3

Joshua D Welch

University of Michigan ann arbor

Career Start Year 2009

Number of shared co-authors 21

Jonathan E Bard

University at Buffalo

Career Start Year 2007

Number of shared co-authors 2

Ayshwarya Subramanian

Broad Institute of MIT and Harvard

Career Start Year 2006

Number of shared co-authors 3

Rahul Satija

Center for Genomics and Systems Biology, New York University

Career Start Year 2006

Number of shared co-authors 13

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

Simon Anders

Heidelberg University

Career Start Year 2006

Number of shared co-authors 2

Alex K Shalek

Institute for Medical Engineering & Science, Massachusetts Institute of Technology

Career Start Year 2005

Number of shared co-authors 7

Maria Chikina

University of Pittsburgh

Career Start Year 2005

Number of shared co-authors 3

Kun Qu

University of Science and Technology of China

Career Start Year 2005

Number of shared co-authors 1

Jessica C Mar

Australian Institute for Bioengineering and Nanotechnology, University of Queensland

Career Start Year 2005

Number of shared co-authors 3

John C Marioni

Cancer Research UK Cambridge Institute, University of Cambridge

Career Start Year 2004

Number of shared co-authors 8

Terence P Speed

Walter and Eliza Hall Institute of Medical Research

Career Start Year 2003

Number of shared co-authors 0

Raphael Gottardo

Fred Hutchinson Cancer Center

Career Start Year 2003

Number of shared co-authors 8

Zhandong Liu

Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital

Career Start Year 2003

Number of shared co-authors 4

Purvesh Khatri

University of California San Francisco

Career Start Year 2002

Number of shared co-authors 1

Jean Yee Hwa Yang

The University of Sydney

Career Start Year 2001

Number of shared co-authors 0

Mikhail G Dozmorov

Virginia Commonwealth University

Career Start Year 2001

Number of shared co-authors 0

Shawn Levy

HudsonAlpha Institute for Biotechnology

Career Start Year 1999

Number of shared co-authors 3

Mark D Robinson

University of Zurich

Career Start Year 1997

Number of shared co-authors 1

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 2

Aaron M Newman

Stanford University

Career Start Year 1994

Number of shared co-authors 0

Fabian J Theis

Technical University of Munich

Career Start Year 1992

Number of shared co-authors 8

Yuval Kluger

Yale University School of Medicine

Career Start Year 1984

Number of shared co-authors 0

row(s) 1 - 30 of 30

Richard H Scheuermann

J. Craig Venter Institute

Co-authored papers 27

Ed S Lein

Allen Institute for Brain Science

Co-authored papers 16

Jeremy A Miller

Co-authored papers 11

Trygve E Bakken

Allen Institute for Brain Science

Co-authored papers 11

Roger S Lasken

J. Craig Venter Institute

Co-authored papers 7

Nicholas J Schork

University of California San Diego

Co-authored papers 6

Song-Lin Ding

Allen Institute for Brain Science

Co-authored papers 6

Michael Hawrylycz

Allen Institute for Brain Science

Co-authored papers 6

Hongkui Zeng

Allen Institute for Brain Science

Co-authored papers 5

Boudewijn P F Lelieveldt

Leiden University Medical Center

Co-authored papers 5

Zizhen Yao

Allen Institute for Brain Science

Co-authored papers 5

Jeff Goldy

Co-authored papers 4

David Osumi-Sutherland

European Bioinformatics Institute

Co-authored papers 4

Ronna Hertzano

University of Maryland School of Medicine

Co-authored papers 3

Alexandra J Lee

University of Pennsylvania

Co-authored papers 3

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 3

Amy Bernard

The Kavli Foundation

Co-authored papers 3

Shawn Zheng Kai Tan

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 3

Owen White

Institute for Genome Sciences, University of Maryland School of Medicine

Co-authored papers 3

Seth A Ament

Institute for Genome Sciences, University of Maryland School of Medicine