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Author Details

Douglas B Rusch
Center for Genomics and Bioinformatics, Indiana University
1998
116
42
PMIDPaper TitleJournal TitlePublished Year
37662415Divergent Folding-Mediated Epistasis Among Unstable Membrane Protein Variants.bioRxiv2024
36534986Transcriptome-wide analysis of pseudouridylation in Drosophila melanogaster.G3 (Bethesda)2023
37632027Host Derivation of Sindbis Virus Influences Mammalian Type I Interferon Response to Infection.Viruses2023
37621654Transcriptomic analyses of ovarian clear-cell carcinoma with concurrent endometriosis.Front Endocrinol (Lausanne)2023
37531219Ravidomycin Analogs from <i>Streptomyces</i> sp. Exhibit Altered Antimicrobial and Cytotoxic Selectivity.J Nat Prod2023
37154562Host Association and Spatial Proximity Shape but Do Not Constrain Population Structure in the Mutualistic Symbiont Xenorhabdus bovienii.mBio2023
37430354Exploring breast tissue microbial composition and the association with breast cancer risk factors.Breast Cancer Res2023
34650231Sulfur cycling and host-virus interactions in Aquificales-dominated biofilms from Yellowstone's hottest ecosystems.ISME J2022
37938727High-resolution phylogenetic and population genetic analysis of microbial communities with RoC-ITS.ISME Commun2022
35381449How experimental competition changes ovarian gene activity in free-living birds: Implications for steroidogenesis, maternal effects, and beyond.Horm Behav2022
35378129Structural and genome-wide analyses suggest that transposon-derived protein SETMAR alters transcription and splicing.J Biol Chem2022
35567363How thermal challenges change gene regulation in the songbird brain and gonad: Implications for sexual selection in our changing world.Mol Ecol2022
34849844A novel transposable element-based authentication protocol for Drosophila cell lines.G3 (Bethesda)2022
35135874Nitric oxide stimulates type IV MSHA pilus retraction in <i>Vibrio cholerae</i> via activation of the phosphodiesterase CdpA.Proc Natl Acad Sci U S A2022
33998118The quorum-sensing systems of Vibrio campbelliiâ¿¿DS40M4â¿¿andâ¿¿BB120â¿¿are genetically and functionally distinct.Environ Microbiol2021
33876843Dual inhibition of MEK1/2 and MEK5 suppresses the EMT/migration axis in triple-negative breast cancer through FRA-1 regulation.J Cell Biochem2021
33753482Experimental competition induces immediate and lasting effects on the neurogenome in free-living female birds.Proc Natl Acad Sci U S A2021
33727356The ChiS-Family DNA-Binding Domain Contains a Cryptic Helix-Turn-Helix Variant.mBio2021
33632774Bacterial-Driven Inflammation and Mutant <i>BRAF</i> Expression Combine to Promote Murine Colon Tumorigenesis That Is Sensitive to Immune Checkpoint Therapy.Cancer Discov2021
34938321<i>S-RNase</i> Alleles Associated With Self-Compatibility in the Tomato Clade: Structure, Origins, and Expression Plasticity.Front Genet2021
34541301A Hybrid Nanofiber/Paper Cell Culture Platform for Building a 3D Blood-brain Barrier Model.Small Methods2021
34339299The Polar Flagellar Transcriptional Regulatory Network in <i>Vibrio campbellii</i> Deviates from Canonical <i>Vibrio</i> Species.J Bacteriol2021
34231077ZEB2 regulates endocrine therapy sensitivity and metastasis in luminal a breast cancer cells through a non-canonical mechanism.Breast Cancer Res Treat2021
34026925Constitutive activation of MEK5 promotes a mesenchymal and migratory cell phenotype in triple negative breast cancer.Oncoscience2021
32181350Probing biophysical sequence constraints within the transmembrane domains of rhodopsin by deep mutational scanning.Sci Adv2020
31745565Global H-NS counter-silencing by LuxR activates quorum sensing gene expression.Nucleic Acids Res2020
31859450Increased microbiota diversity associated with higher FEV<sub>0.5</sub> in infants.Pediatr Pulmonol2020
33319480Nitrogen cycling microbiomes are structured by plant mycorrhizal associations with consequences for nitrogen oxide fluxes in forests.Glob Chang Biol2020
32796402A novel screening approach comparing kinase activity of small molecule inhibitors with similar molecular structures and distinct biologic effects in triple-negative breast cancer to identify targetable signaling pathways.Anticancer Drugs2020
32703823Complete Genome Sequence of Vibrio coralliilyticus OCN008.Microbiol Resour Announc2020
32843721Pten and Dicer1 loss in the mouse uterus causes poorly differentiated endometrial adenocarcinoma.Oncogene2020
30659144Microbial mechanisms and ecosystem flux estimation for aerobic NO<sub>y</sub> emissions from deciduous forest soils.Proc Natl Acad Sci U S A2019
31699031The neurogenomic transition from territory establishment to parenting in a territorial female songbird.BMC Genomics2019
31676844Tissue-specific expression profiles and positive selection analysis in the tree swallow (Tachycineta bicolor) using a de novo transcriptome assembly.Sci Rep2019
31848285Diversity in Natural Transformation Frequencies and Regulation across <i>Vibrio</i> Species.mBio2019
31240997DNA methyltransferase inhibition reduces inflammation-induced colon tumorigenesis.Epigenetics2019
31600962Transcriptome Profiling Reveals Matrisome Alteration as a Key Feature of Ovarian Cancer Progression.Cancers (Basel)2019
31451548Destabilization of the Tumor-Inducing Plasmid from an Octopine-Type <i>Agrobacterium tumefaciens</i> Lineage Drives a Large Deletion in the Co-resident At Megaplasmid.G3 (Bethesda)2019
30833730Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota.Nat Microbiol2019
30833355Flagellar Mutants Have Reduced Pilus Synthesis in <i>Caulobacter crescentus</i>.J Bacteriol2019
30833353Redefining the Small Regulatory RNA Transcriptome in Streptococcus pneumoniae Serotype 2 Strain D39.J Bacteriol2019
28746735Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes.Mol Ecol2018
29405661In children, the microbiota of the nasopharynx and bronchoalveolar lavage fluid are both similar and different.Pediatr Pulmonol2018
29760463Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats.Nat Microbiol2018
29759990Epigenetic Targeting of Adipocytes Inhibits High-Grade Serous Ovarian Cancer Cell Migration and Invasion.Mol Cancer Res2018
29531178Promoter Boundaries for the <i>luxCDABE</i> and <i>betIBA-proXWV</i> Operons in Vibrio harveyi Defined by the Method Rapid Arbitrary PCR Insertion Libraries (RAIL).J Bacteriol2018
29058069Genes linked to species diversity in a sexually dimorphic communication signal in electric fish.J Comp Physiol A Neuroethol Sens Neural Behav Physiol2018
29199514RNA polymerases IV and V influence the 3' boundaries of Polymerase II transcription units in Arabidopsis.RNA Biol2018
27392085Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly.ISME J2017
28140384Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.Sci Data2017
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Collaborators

J C Venter
The J. Craig Venter Institute
Co-authored papers 16
Shibu Yooseph
University of Central Florida
Co-authored papers 13
Aaron L Halpern
Illumina Inc.
Co-authored papers 12
Karin A Remington
The J. Craig Venter Institute.
Co-authored papers 7
Cynthia Andrews-Pfannkoch
Mayo Clinic
Co-authored papers 6
Shannon J Williamson
J. Craig Venter Institute
Co-authored papers 6
Haixu Tang
Indiana University
Co-authored papers 6
Marvin Frazier
Co-authored papers 6
Jonathan A Eisen
McLean Hospital
Co-authored papers 5
Arthur L Delcher
Center for Computational Biology, Johns Hopkins School of Medicine
Co-authored papers 5
Yu-Hui Rogers
Johns Hopkins Bayview Research Campus
Co-authored papers 5
Hamilton O Smith
J. Craig Venter Institute
Co-authored papers 5
Robert Friedman
University of South Carolina
Co-authored papers 5
Jennifer R Wortman
Broad Institute of MIT and Harvard
Co-authored papers 5
Jonathan H Badger
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 5
Chinnappa D Kodira
GE Global Research Center
Co-authored papers 4
Steve Ferriera
Broad Institute of MIT and Harvard
Co-authored papers 4
Granger G Sutton
J. Craig Venter Institute
Co-authored papers 4
Steven L Salzberg
Center for Computational Biology, Johns Hopkins University
Co-authored papers 4
Saul Kravitz
Co-authored papers 4
Karen Beeson
J. Craig Venter Institute
Co-authored papers 4
Granger Sutton
J. Craig Venter Institute
Co-authored papers 4
Karla B Heidelberg
The University of Southern California
Co-authored papers 4
Mathangi Thiagarajan
Co-authored papers 4
Mark Yandell
University of Utah
Co-authored papers 3
Cheryl L Kraft
Co-authored papers 3
Tim H-M Huang
University of Texas Health San Antonio (UTHSA)
Co-authored papers 3
Johannes B Goll
.The Emmes Corporation
Co-authored papers 3
Samuel Levy
Bluestar Genomics Inc.
Co-authored papers 3
Zhongwu Lai
Oncology R&D
Co-authored papers 3
Release 1.2