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Author Details

Vishwanath R Iyer
Indian Institute of Technology Bombay
1995
98
49
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37812641The selfish yeast plasmid exploits a SWI/SNF-type chromatin remodeling complex for hitchhiking on chromosomes and ensuring high-fidelity propagation.PLoS Genet2023
37812641The selfish yeast plasmid exploits a SWI/SNF-type chromatin remodeling complex for hitchhiking on chromosomes and ensuring high-fidelity propagation.PLoS Genet2023
34677796Emerging Epigenetic Therapies for Brain Tumors.Neuromolecular Med2022
34677796Emerging Epigenetic Therapies for Brain Tumors.Neuromolecular Med2022
34447380IgG Immune Complexes Inhibit Naïve T Cell Proliferation and Suppress Effector Function in Cytotoxic T Cells.Front Immunol2021
34447380IgG Immune Complexes Inhibit Naïve T Cell Proliferation and Suppress Effector Function in Cytotoxic T Cells.Front Immunol2021
31624087<i>ELF4</i> Is a Target of miR-124 and Promotes Neuroblastoma Proliferation and Undifferentiated State.Mol Cancer Res2020
31624087<i>ELF4</i> Is a Target of miR-124 and Promotes Neuroblastoma Proliferation and Undifferentiated State.Mol Cancer Res2020
31722407The histone variant H2A.Z in yeast is almost exclusively incorporated into the +1 nucleosome in the direction of transcription.Nucleic Acids Res2020
32537667The specificity of H2A.Z occupancy in the yeast genome and its relationship to transcription.Curr Genet2020
31722407The histone variant H2A.Z in yeast is almost exclusively incorporated into the +1 nucleosome in the direction of transcription.Nucleic Acids Res2020
32537667The specificity of H2A.Z occupancy in the yeast genome and its relationship to transcription.Curr Genet2020
30651280MicroRNAs reinforce repression of PRC2 transcriptional targets independently and through a feed-forward regulatory network.Genome Res2019
30651280MicroRNAs reinforce repression of PRC2 transcriptional targets independently and through a feed-forward regulatory network.Genome Res2019
31513636PRC2 activates interferon-stimulated genes indirectly by repressing miRNAs in glioblastoma.PLoS One2019
31513636PRC2 activates interferon-stimulated genes indirectly by repressing miRNAs in glioblastoma.PLoS One2019
29549165Bivalent Chromatin Domains in Glioblastoma Reveal a Subtype-Specific Signature of Glioma Stem Cells.Cancer Res2018
29950518Identification and removal of sequencing artifacts produced by mispriming during reverse transcription in multiple RNA-seq technologies.RNA2018
30083469Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data.PeerJ2018
29549165Bivalent Chromatin Domains in Glioblastoma Reveal a Subtype-Specific Signature of Glioma Stem Cells.Cancer Res2018
29950518Identification and removal of sequencing artifacts produced by mispriming during reverse transcription in multiple RNA-seq technologies.RNA2018
30083469Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data.PeerJ2018
28716006Ethylene induces combinatorial effects of histone H3 acetylation in gene expression in Arabidopsis.BMC Genomics2017
28460001The ATP-dependent chromatin remodeler Chd1 is recruited by transcription elongation factors and maintains H3K4me3/H3K36me3 domains at actively transcribed and spliced genes.Nucleic Acids Res2017
28854740The ATP-dependent chromatin remodeler Chd1 is recruited by transcription elongation factors and maintains H3K4me3/H3K36me3 domains at actively transcribed and spliced genes.Nucleic Acids Res2017
28716006Ethylene induces combinatorial effects of histone H3 acetylation in gene expression in Arabidopsis.BMC Genomics2017
29038163Corrected and Republished from: BCL11A Is a Critical Component of a Transcriptional Network That Activates RAG Expression and V(D)J Recombination.Mol Cell Biol2017
29030471Retraction for Lee et al., "The BCL11A Transcription Factor Directly Activates RAG Gene Expression and V(D)J Recombination".Mol Cell Biol2017
31080945Arid3a regulates mesoderm differentiation in mouse embryonic stem cells.J Stem Cell Ther Transplant2017
31080945Arid3a regulates mesoderm differentiation in mouse embryonic stem cells.J Stem Cell Ther Transplant2017
28460001The ATP-dependent chromatin remodeler Chd1 is recruited by transcription elongation factors and maintains H3K4me3/H3K36me3 domains at actively transcribed and spliced genes.Nucleic Acids Res2017
29030471Retraction for Lee et al., "The BCL11A Transcription Factor Directly Activates RAG Gene Expression and V(D)J Recombination".Mol Cell Biol2017
29038163Corrected and Republished from: BCL11A Is a Critical Component of a Transcriptional Network That Activates RAG Expression and V(D)J Recombination.Mol Cell Biol2017
28854740The ATP-dependent chromatin remodeler Chd1 is recruited by transcription elongation factors and maintains H3K4me3/H3K36me3 domains at actively transcribed and spliced genes.Nucleic Acids Res2017
26837578Isolation of a non-genomic origin fluoroquinolone responsive regulatory element using a combinatorial bioengineering approach.Nucleic Acids Res2016
27066865The Determinants of Directionality in Transcriptional Initiation.Trends Genet2016
26837578Isolation of a non-genomic origin fluoroquinolone responsive regulatory element using a combinatorial bioengineering approach.Nucleic Acids Res2016
27339990Synthetic evolutionary origin of a proofreading reverse transcriptase.Science2016
26924072Stem cell and neurogenic gene-expression profiles link prostate basal cells to aggressive prostate cancer.Nat Commun2016
26787899Subtype-specific addiction of the activated B-cell subset of diffuse large B-cell lymphoma to FOXP1.Proc Natl Acad Sci U S A2016
26497660Novel association of polymorphic genetic variants with predictors of outcome of catheter ablation in atrial fibrillation: new directions from a prospective study (DECAF).J Interv Card Electrophysiol2016
26497660Novel association of polymorphic genetic variants with predictors of outcome of catheter ablation in atrial fibrillation: new directions from a prospective study (DECAF).J Interv Card Electrophysiol2016
27339990Synthetic evolutionary origin of a proofreading reverse transcriptase.Science2016
27066865The Determinants of Directionality in Transcriptional Initiation.Trends Genet2016
26924072Stem cell and neurogenic gene-expression profiles link prostate basal cells to aggressive prostate cancer.Nat Commun2016
26787899Subtype-specific addiction of the activated B-cell subset of diffuse large B-cell lymphoma to FOXP1.Proc Natl Acad Sci U S A2016
25653011miR-503 represses human cell proliferation and directly targets the oncogene DDHD2 by non-canonical target pairing.BMC Genomics2015
25919664Correction: Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association.PLoS Genet2015
25653011miR-503 represses human cell proliferation and directly targets the oncogene DDHD2 by non-canonical target pairing.BMC Genomics2015
25992613MiR-191 Regulates Primary Human Fibroblast Proliferation and Directly Targets Multiple Oncogenes.PLoS One2015
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Collaborators

Bum-Kyu Lee
Cancer Research Center, University at Albany, State University of New York
Co-authored papers 19
Gregory E Crawford
Center for Genomic & Computational Biology, Duke University
Co-authored papers 11
Jason D Lieb
The University of Chicago
Co-authored papers 10
Jonghwan Kim
Co-authored papers 9
Terrence S Furey
University of North Carolina at Chapel Hill
Co-authored papers 8
Ewan Birney
European Bioinformatics Institute
Co-authored papers 8
Akshay Bhinge
Co-authored papers 7
Lingyun Song
Center for Genomic & Computational Biology, Duke University
Co-authored papers 7
Joseph L DeRisi
University of California San Francisco
Co-authored papers 5
Kevin Struhl
Co-authored papers 5
Michael B Eisen
Howard Hughes Medical Institute, University of California Berkeley
Co-authored papers 4
Amelia W Hall
Co-authored papers 4
Darin London
Co-authored papers 4
Michael Snyder
Stanford University
Co-authored papers 4
Damian Keefe
University of Adelaide
Co-authored papers 4
David Botstein
Calico Life Sciences LLC
Co-authored papers 4
Ryan M McDaniell
The Children's Hospital of Philadelphia
Co-authored papers 4
Nathan Sheffield (CM4AI)
University of Virginia
Co-authored papers 3
Alan P Boyle
University of Michigan ann arbor
Co-authored papers 3
Ian Dunham
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Edward M Marcotte
University of Texas
Co-authored papers 3
Louis M Staudt
National Cancer Institute, National Institutes of Health
Co-authored papers 3
Ghia Euskirchen
Co-authored papers 3
Nathan S Abell
Co-authored papers 3
Paul G Giresi
Center for Personal Dynamic Regulomes
Co-authored papers 3
John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 3
Zheng Liu
Chinese Academy of Agricultural Sciences
Co-authored papers 3
Mark Gerstein
Yale University
Co-authored papers 2
Peter J Bickel
Co-authored papers 2
Stephen C J Parker
University of Michigan ann arbor
Co-authored papers 2
Release 1.2