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Author Details

Berend Snel
Utrecht University
1998
120
53
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37934467A farnesyl-dependent structural role for CENP-E in expansion of the fibrous corona.J Cell Biol2024
36928843Evolution and implications of de novo genes in humans.Nat Ecol Evol2023
37491455Obligate endosymbiosis enables genome expansion during eukaryogenesis.Commun Biol2023
37949928Uncoupled evolution of the Polycomb system and deep origin of non-canonical PRC1.Commun Biol2023
36790109Increased Sampling and Intracomplex Homologies Favor Vertical Over Horizontal Inheritance of the Dam1 Complex.Genome Biol Evol2023
36631250Integrating Phylogenetics With Intron Positions Illuminates the Origin of the Complex Spliceosome.Mol Biol Evol2023
36547648The Sugar Metabolic Model of <i>Aspergillus niger</i> Can Only Be Reliably Transferred to Fungi of Its Phylum.J Fungi (Basel)2022
35482058Evolution of Complex Regulation for Cell-Cycle Control.Genome Biol Evol2022
35800781<i>Caenorhabditis elegans</i> MES-3 is a highly divergent ortholog of the canonical PRC2 component SUZ12.iScience2022
35421089Phylogenetic profiling in eukaryotes: The effect of species, orthologous group, and interactome selection on protein interaction prediction.PLoS One2022
35589959The spread of the first introns in proto-eukaryotic paralogs.Commun Biol2022
32935832Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes.Brief Bioinform2021
34009673Chromosomal instability by mutations in the novel minor spliceosome component CENATAC.EMBO J2021
33106602Timing the origin of eukaryotic cellular complexity with ancient duplications.Nat Ecol Evol2021
32428500Evolutionary Dynamics of the Spindle Assembly Checkpoint in Eukaryotes.Curr Biol2020
32770961Recurrent sequence evolution after independent gene duplication.BMC Evol Biol2020
30567971Novel pipeline identifies new upstream ORFs and non-AUG initiating main ORFs with conserved amino acid sequences in the 5' leader of mRNAs in <i>Arabidopsis thaliana</i>.RNA2019
31461468Measuring the impact of gene prediction on gene loss estimates in Eukaryotes by quantifying falsely inferred absences.PLoS Comput Biol2019
31127038Mosaic origin of the eukaryotic kinetochore.Proc Natl Acad Sci U S A2019
31123066Epigenetics and transcription regulation during eukaryotic diversification: the saga of TFIID.Genes Dev2019
31037469The molecular basis of monopolin recruitment to the kinetochore.Chromosoma2019
31026339Inferring the Evolutionary History of Your Favorite Protein: A Guide for Molecular Biologists.Bioessays2019
29860175The Arabidopsis bZIP transcription factor family-an update.Curr Opin Plant Biol2018
27935038Extensive translational regulation during seed germination revealed by polysomal profiling.New Phytol2017
28472331Unique Phylogenetic Distributions of the Ska and Dam1 Complexes Support Functional Analogy and Suggest Multiple Parallel Displacements of Ska by Dam1.Genome Biol Evol2017
29191215Domestication of self-splicing introns during eukaryogenesis: the rise of the complex spliceosomal machinery.Biol Direct2017
28642229Evolutionary dynamics of the kinetochore network in eukaryotes as revealed by comparative genomics.EMBO Rep2017
27457880The phylogeny of C/S1 bZIP transcription factors reveals a shared algal ancestry and the pre-angiosperm translational regulation of S1 transcripts.Sci Rep2016
28003474Phylogenomics-guided discovery of a novel conserved cassette of short linear motifs in BubR1 essential for the spindle checkpoint.Open Biol2016
27920338The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.Plant Cell2016
25069953Evolutionary acquisition of cysteines determines FOXO paralog-specific redox signaling.Antioxid Redox Signal2015
26254484Widespread Recurrent Patterns of Rapid Repeat Evolution in the Kinetochore Scaffold KNL1.Genome Biol Evol2015
26700642A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions.BMC Biol2015
26066639Spatial Organization in Protein Kinase A Signaling Emerged at the Base of Animal Evolution.J Proteome Res2015
25881027The plant Polycomb repressive complex 1 (PRC1) existed in the ancestor of seed plants and has a complex duplication history.BMC Evol Biol2015
25957681Genesis of chromatin and transcription dynamics in the origin of species.Cell2015
25376907DOWNY MILDEW RESISTANT 6 and DMR6-LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis.Plant J2015
24588563Quantitative label-free phosphoproteomics of six different life stages of the late blight pathogen Phytophthora infestans reveals abundant phosphorylation of members of the CRN effector family.J Proteome Res2014
25403240Increased sucrose levels mediate selective mRNA translation in Arabidopsis.BMC Plant Biol2014
24766815Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors.Cell2014
24760277Small homologous blocks in phytophthora genomes do not point to an ancient whole-genome duplication.Genome Biol Evol2014
24520157A subfamily of putative cytokinin receptors is revealed by an analysis of the evolution of the two-component signaling system of plants.Plant Physiol2014
24567304The histone modification H3K27me3 is retained after gene duplication and correlates with conserved noncoding sequences in Arabidopsis.Genome Biol Evol2014
23182343ABI4: versatile activator and repressor.Trends Plant Sci2013
24344183Arrayed BUB recruitment modules in the kinetochore scaffold KNL1 promote accurate chromosome segregation.J Cell Biol2013
23874172Shared protein complex subunits contribute to explaining disrupted co-occurrence.PLoS Comput Biol2013
23865555A predicted functional gene network for the plant pathogen Phytophthora infestans as a framework for genomic biology.BMC Genomics2013
23785293Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica.PLoS Genet2013
23569217A TPR domain-containing N-terminal module of MPS1 is required for its kinetochore localization by Aurora B.J Cell Biol2013
22198768Database independent proteomics analysis of the ostrich and human proteome.Proc Natl Acad Sci U S A2012
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Collaborators

Martijn A Huynen
Radboud University Medical Centre Nijmegen
Co-authored papers 36
Peer Bork
University of Wurzburg
Co-authored papers 23
Teunis J P van Dam
Utrecht University
Co-authored papers 9
Albert J R Heck
Utrecht University
Co-authored papers 7
Vera van Noort
Leiden University, Institute of Biology Leiden
Co-authored papers 7
Christian von Mering
Co-authored papers 6
Toni Gabald??n
Catalan Institution for Research and Advanced Studies
Co-authored papers 4
Like Fokkens
University of Amsterdam
Co-authored papers 4
Mariel O Brok
Princess Maxima Center for Pediatric Oncology
Co-authored papers 3
Tineke L Lenstra
the Netherlands Cancer Institute, Oncode Institute
Co-authored papers 3
Katrin Sameith
Center for Molecular and Cellular Bioengineering
Co-authored papers 3
Patrick Kemmeren
Princess Maxima Center for Pediatric Oncology
Co-authored papers 3
Sake van Wageningen
Oncode Institute, The Netherlands Cancer Institute
Co-authored papers 3
Frank C P Holstege
Princess Maxima Center for Pediatric Oncology
Co-authored papers 3
Joris J Benschop
Center for Molecular Medicine, University Medical Center Utrecht
Co-authored papers 3
Dik van Leenen
Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University
Co-authored papers 3
Eva Apweiler
University Medical Centre Utrecht, Universiteitsweg
Co-authored papers 3
Philip Lijnzaad
Princess Maxima Center for Pediatric Oncology
Co-authored papers 3
Sander R van Hooff
Princess Maxima Center for Pediatric Oncology
Co-authored papers 3
Nathalie Brabers
University Medical Centre Utrecht, Universiteitsweg
Co-authored papers 3
Marian J A Groot Koerkamp
Princess Maxima Center for Pediatric Oncology Research
Co-authored papers 3
Thanasis Margaritis
Princess Maxima Center for Pediatric Oncology
Co-authored papers 2
Lars Juhl Jensen
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Co-authored papers 2
Edwin Cuppen
Hartwig Medical Foundation
Co-authored papers 2
Antony J Miles
University Medical Centre Utrecht, Universiteitsweg
Co-authored papers 2
Vincent Robert
Westerdijk Fungal Biodiversity Institute
Co-authored papers 2
Jan O Korbel
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Linda V Bakker
Wageningen University and Research
Co-authored papers 2
Loes A L van de Pasch
University Medical Centre Utrecht, Universiteitsweg
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