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Author Details

Alex Buchanan
Oregon Health and Science University
2014
11
10
PMIDPaper TitleJournal TitlePublished Year
34146471A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.Cell Syst2021
32097025Exploring Integrative Analysis Using the BioMedical Evidence Graph.JCO Clin Cancer Inform2020
31506093Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges.Genome Biol2019
28131897Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer.J Nutr Biochem2017
26337778Phloroglucinol functions as an intracellular and intercellular chemical messenger influencing gene expression in Pseudomonas protegens.Environ Microbiol2016
25362506Interactions of Nitrosomonas europaea and Nitrobacter winogradskyi grown in co-culture.Arch Microbiol2015
26091899RNA-Seq analysis of resistant and susceptible potato varieties during the early stages of potato virus Y infection.BMC Genomics2015
25673652Nitrobacter winogradskyi transcriptomic response to low and high ammonium concentrations.FEMS Microbiol Lett2015
25372122Alternative Splicing in the Obligate Biotrophic Oomycete Pathogen Pseudoperonospora cubensis.Mol Plant Microbe Interact2015
24466240Effects of sulforaphane and 3,3'-diindolylmethane on genome-wide promoter methylation in normal prostate epithelial cells and prostate cancer cells.PLoS One2014
25044704Transcriptome analysis reveals a dynamic and differential transcriptional response to sulforaphane in normal and prostate cancer cells and suggests a role for Sp1 in chemoprevention.Mol Nutr Food Res2014
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Collaborators

David E Williams
Co-authored papers 3
Kyle Ellrott
Oregon Health & Science University
Co-authored papers 3
Joshua M Stuart
University of California at Santa Cruz
Co-authored papers 3
Emily Ho
Linus Pauling Institute, Oregon State University
Co-authored papers 3
Gustavo Stolovitzky
IBM T.J. Watson Research Center
Co-authored papers 2
Justin Guinney
University of Washington
Co-authored papers 2
Paul C Boutros
University of California los angeles
Co-authored papers 2
Thomas Yu
Co-authored papers 2
Allison L Creason
Oregon Health and Science University
Co-authored papers 2
Adam J Struck
Oregon Health & Science University
Co-authored papers 1
Mark Akeson
University of California
Co-authored papers 1
John D Watson
Ontario Institute for Cancer Research
Co-authored papers 1
Kristen K Dang
Benaroya Research Institute at Virginia Mason
Co-authored papers 1
Matthew Inkman
The Genome Institute, Washington University School of Medicine
Co-authored papers 1
Brian J Haas
Broad Institute of MIT and Harvard
Co-authored papers 1
Cristian Caloian
Ontario Institute for Cancer Research
Co-authored papers 1
James Eddy
Co-authored papers 1
Kami E Chiotti
Oregon Health & Science University
Co-authored papers 1
Mehmet Eren Ahsen
Gies College of Business, University of Illinois at Urbana-Champaign.
Co-authored papers 1
Sebastian Uhrig
National Center for Tumor Diseases (NCT), German Cancer Research Center (DKFZ)
Co-authored papers 1
Thea Norman
Bill & Melinda Gates Foundation
Co-authored papers 1
Jeltje van Baren
Biomolecular Engineering and UC Santa Cruz Genome Institute, University of California
Co-authored papers 1
John Chilton
The Pennsylvania State University, University Park
Co-authored papers 1
Thomas Schaffter
Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Jordan A Lee
Oregon Health and Science University
Co-authored papers 1
Dmitri V Rozanov
Oregon Health and Science University
Co-authored papers 1
Jin Zhang
Washington University in St. Louis
Co-authored papers 1
Ryan Spangler
Oregon Health and Science University
Co-authored papers 1
Julio Saez-Rodriguez
Institute of Computational Biomedicine, Heidelberg University
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David Haan
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