Author details

Full Name

Hahnbeom Park

Affiliation

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36847771	Benchmarking applicability of medium-resolution cryo-EM protein structures for structure-based drug design.	J Comput Chem	2023
37567072	Development of a novel histone deacetylase inhibitor unveils the role of HDAC11 in alleviating depression by inhibition of microglial activation.		2023
36544468	Evaluating GPCR modeling and docking strategies in the era of deep learning-based protein structure prediction.	Comput Struct Biotechnol J	2022
35972994	Pseudo-Isolated Î±-Helix Platform for the Recognition of Deep and Narrow Targets.	Journal of the American Chemical Society	2022
35667008	Correction to "The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design".	J Chem Theory Comput	2022
34612205	Divergent acyl carrier protein decouples mitochondrial Fe-S cluster biogenesis from fatty acid synthesis in malaria parasites.	Elife	2021
33637700	Improved protein structure refinement guided by deep learning based accuracy estimation.	Nat Commun	2021
33577321	Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein-Ligand Docking.	J Chem Theory Comput	2021
34331359	Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14.	Proteins	2021
34324224	Protein oligomer modeling guided by predicted interchain contacts in CASP14.	Proteins	2021
32956350	Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking discrimination.	PLoS Comput Biol	2020
31896580	Improved protein structure prediction using predicted interresidue orientations.	Proc Natl Acad Sci U S A	2020
32483333	Macromolecular modeling and design in Rosetta: recent methods and frameworks.	Nat Methods	2020
33134287	Prediction of Protein Mutational Free Energy: Benchmark and Sampling Improvements Increase Classification Accuracy.	Front Bioeng Biotechnol	2020
31325340	High-accuracy refinement using Rosetta in CASP13.	Proteins	2019
29786430	GalaxyGPCRloop: Template-Based and Ab Initio Structure Sampling of the Extracellular Loops of G-Protein-Coupled Receptors.	J Chem Inf Model	2018
28913931	Automatic structure prediction of oligomeric assemblies using Robetta in CASP12.	Proteins	2018
28940798	Protein structure prediction using Rosetta in CASP12.	Proteins	2018
30209393	De novo design of a fluorescence-activating Î²-barrel.	Nature	2018
29507254	Protein homology model refinement by large-scale energy optimization.	Proc Natl Acad Sci U S A	2018
28104891	Protein structure determination using metagenome sequence data.	Science	2017
28430426	The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design.	J Chem Theory Comput	2017
28980354	Sampling and energy evaluation challenges in ligand binding protein design.	Protein Sci	2017
27766851	Simultaneous Optimization of Biomolecular Energy Functions on Features from Small Molecules and Macromolecules.	J Chem Theory Comput	2016
26857542	Structure prediction using sparse simulated NOE restraints with Rosetta in CASP11.	Proteins	2016
26205421	CASP11 refinement experiments with ROSETTA.	Proteins	2016
26335199	Large-scale determination of previously unsolved protein structures using evolutionary information.	Elife	2015
25960407	The origin of consistent protein structure refinement from structural averaging.	Structure	2015
26295792	High-resolution protein-protein docking by global optimization: recent advances and future challenges.	Curr Opin Struct Biol	2015
24155158	Blind prediction of interfacial water positions in CAPRI.	Proteins	2014
25419655	Protein loop modeling using a new hybrid energy function and its application to modeling in inaccurate structural environments.	PLoS One	2014
23737448	GalaxyRefine: Protein structure refinement driven by side-chain repacking.	Nucleic Acids Res	2013
23843247	Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.	Proteins	2013
23413437	GalaxyGemini: a web server for protein homo-oligomer structure prediction based on similarity.	Bioinformatics	2013
22488760	Refinement of unreliable local regions in template-based protein models.	Proteins	2012
22649060	GalaxyWEB server for protein structure prediction and refinement.	Nucleic Acids Res	2012
22883815	GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions.	BMC Bioinformatics	2012
21689529	Transmembrane signaling of chemotaxis receptor tar: insights from molecular dynamics simulation studies.	Biophys J	2011
21576220	The FALC-Loop web server for protein loop modeling.	Nucleic Acids Res	2011
21809817	How does a registry change in dynein's coiled-coil stalk drive binding of dynein to microtubules?	Biochemistry	2011
22001016	Community-wide assessment of protein-interface modeling suggests improvements to design methodology.	J Mol Biol	2011
21755541	Refinement of protein termini in template-based modeling using conformational space annealing.	Proteins	2011
20872556	Protein loop modeling by using fragment assembly and analytical loop closure.	Proteins	2010
18154287	Strength of Calpha-H...O=C hydrogen bonds in transmembrane proteins.	J Phys Chem B	2008