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Author Details

Libusha Kelly
Albert Einstein College of Medicine
2001
55
26
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37943168The Breast Microbiome in Breast Cancer Risk and Progression: A Narrative Review.Cancer Epidemiol Biomarkers Prev2024
36315910Dietary iron restriction protects against vaso-occlusion and organ damage in murine sickle cell disease.Blood2023
37205395Large language models improve annotation of viral proteins.Res Sq2023
36920074MAT Gain of Activity Mutation in <i>Helicobacter pylori</i> Is Associated with Resistance to MTAN Transition State Analogues.ACS Infect Dis2023
36796334What do you most want to understand about how collective features emerge in microbial communities?Cell Syst2023
35041647Longitudinally monitored immune biomarkers predict the timing of COVID-19 outcomes.PLoS Comput Biol2022
35831070Genomic surveillance of SARS-CoV-2 during the first year of the pandemic in the Bronx enabled clinical and epidemiological inference.Cold Spring Harb Mol Case Stud2022
36266544Bacterial hydrogen sulfide drives cryptic redox chemistry in gut microbial communities.Nat Metab2022
34952771Bioaccumulation as a mechanism of microbiome/drug interactions.Trends Microbiol2022
35042853Resolving the structure of phage-bacteria interactions in the context of natural diversity.Nat Commun2022
33049161Engineering the Microbiome to Prevent Adverse Events: Challenges and Opportunities.Annu Rev Pharmacol Toxicol2021
33741315Bacterial Swarmers Enriched During Intestinal Stress Ameliorate Damage.Gastroenterology2021
33780547Endotoxin Acts Synergistically With Clostridioides difficile Toxin B to Increase Interleukin 1β Production: A Potential Role for the Intestinal Biome in Modifying the Severity of C. difficile Colitis.J Infect Dis2021
34143976Degradation of host translational machinery drives tRNA acquisition in viruses.Cell Syst2021
33057043Topological analysis reveals state transitions in human gut and marine bacterial communities.NPJ Biofilms Microbiomes2020
32101723The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View.Trends Cancer2020
31797586Multiclass Disease Classification from Microbial Whole-Community Metagenomes.Pac Symp Biocomput2020
31171383Predicting and Understanding the Human Microbiome's Impact on Pharmacology.Trends Pharmacol Sci2019
31184303The human gut chemical landscape predicts microbe-mediated biotransformation of foods and drugs.Elife2019
31355459Harnessing the Microbiome to Improve Drug Therapy.Clin Pharmacol Ther2019
31390549Drug Metabolism as a Community Effort.Cell Metab2019
31151933Bringing microbiome-drug interaction research into the clinic.EBioMedicine2019
29364876A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria.Nature2018
29969110Viruses of the Nahant Collection, characterization of 251 marine Vibrionaceae viruses.Sci Data2018
30179231Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments.Sci Data2018
28885302Postinfection Irritable Bowel Syndrome: The Links Between Gastroenteritis, Inflammation, the Microbiome, and Functional Disease.J Clin Gastroenterol2017
29104759Human microbiome signatures of differential colorectal cancer drug metabolism.NPJ Biofilms Microbiomes2017
26198190Microbiology and ecology are vitally important to premedical curricula.Evol Med Public Health2015
26364932Structure and Inhibition of Microbiome β-Glucuronidases Essential to the Alleviation of Cancer Drug Toxicity.Chem Biol2015
25977791Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus.Sci Data2014
22895163Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis.ISME J2013
23657361Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent.ISME J2013
23320838Genomes of marine cyanopodoviruses reveal multiple origins of diversity.Environ Microbiol2013
22102570ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage.Nucleic Acids Res2012
21844365Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism.Proc Natl Acad Sci U S A2011
20052679Comparison of human solute carriers.Protein Sci2010
20799350Functional hot spots in human ATP-binding cassette transporter nucleotide binding domains.Protein Sci2010
20479271Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria.Proc Natl Acad Sci U S A2010
20662890Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments.Environ Microbiol2010
20140207Analysis of high-throughput sequencing and annotation strategies for phage genomes.PLoS One2010
20345942UV hyper-resistance in Prochlorococcus MED4 results from a single base pair deletion just upstream of an operon encoding nudix hydrolase and photolyase.Environ Microbiol2010
19061901Selecting optimum eukaryotic integral membrane proteins for structure determination by rapid expression and solubilization screening.J Mol Biol2009
19840100The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial 'mobilome'.Environ Microbiol2009
19760129A survey of integral alpha-helical membrane proteins.J Struct Funct Genomics2009
19219566Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies.J Struct Funct Genomics2009
18948282MODBASE, a database of annotated comparative protein structure models and associated resources.Nucleic Acids Res2009
19031011Ratiocinative screen of eukaryotic integral membrane protein expression and solubilization for structure determination.J Struct Funct Genomics2009
17437410Lack of support for a role for RLIP76 (RALBP1) in response to treatment or predisposition to epilepsy.Epilepsia2007
17990484Protein interactions and disease phenotypes in the ABC transporter superfamily.Pac Symp Biocomput2007
16381869MODBASE: a database of annotated comparative protein structure models and associated resources.Nucleic Acids Res2006
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Collaborators

Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 13
Ursula Pieper
University of California san francisco
Co-authored papers 8
Katherine Huang
Broad Institute of MIT and Harvard
Co-authored papers 7
Rachel Karchin
Johns Hopkins University
Co-authored papers 6
Narayanan Eswar
University of California at San Francisco
Co-authored papers 5
Kathleen M Giacomini
University of California San Francisco
Co-authored papers 4
Matthew R Henn
Co-authored papers 4
Robert M Stroud
University of California San Francisco
Co-authored papers 4
Deanna L Kroetz
University of California San Francisco
Co-authored papers 4
Zygy Roe-Zurz
Pfizer Inc.
Co-authored papers 3
Huiming Ding
Massachusetts Institute of Technology
Co-authored papers 3
Megan Li
University of California San Francisco
Co-authored papers 3
Franklin A Hays
University of Oklahoma Health Sciences Center
Co-authored papers 3
Luke R Thompson
Northern Gulf Institute, Mississippi State University
Co-authored papers 2
Brian Foster
DOE Joint Genome Institute
Co-authored papers 2
Steven C Almo
Albert Einstein College of Medicine
Co-authored papers 2
Leslie W Chinn
Genentech Inc.
Co-authored papers 2
Fred P Davis
Howard Hughes Medical Institute
Co-authored papers 2
David Eramian
University of California at San Francisco
Co-authored papers 2
David R Cox
Rinat (Pfizer Inc.)
Co-authored papers 2
Marc A Marti-Renom
Universitat Pompeu Fabra (UPF)
Co-authored papers 2
Bryan Krastins
Nuclea Biotechnologies
Co-authored papers 2
Thomas E Ferrin
Department of Pharmaceutical Chemistry, University of California San Francisco
Co-authored papers 2
Benjamin Webb
University of California san francisco
Co-authored papers 2
David A Sarracino
Harvard Partners Center For Genetics and Genomics
Co-authored papers 2
Michael Olivier
Co-authored papers 2
Jason M Gow
University of California san francisco
Co-authored papers 2
Min-Yi Shen
National Chung Hsing University
Co-authored papers 1
Michiko Kawamoto
Co-authored papers 1
Linda Vuong
Betty Irene Moore School of Nursing at the University of California davis
Co-authored papers 1
Release 1.2