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Author Details

W John Wilbur
National Center for Biotechnology Information, National Institutes of Health
1978
111
31
PMIDPaper TitleJournal TitlePublished Year
36471749Comprehensively identifying Long Covid articles with human-in-the-loop machine learning.Patterns (N Y)2023
37930897MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval.Bioinformatics2023
36471749Comprehensively identifying Long Covid articles with human-in-the-loop machine learning.Patterns (N Y)2023
37930897MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval.Bioinformatics2023
36777262Evaluation of two collocated federal equivalent method PM<sub>2.5</sub> instruments over a wide range of concentrations in Sarajevo, Bosnia and Herzegovina.Atmos Pollut Res2022
36777262Evaluation of two collocated federal equivalent method PM<sub>2.5</sub> instruments over a wide range of concentrations in Sarajevo, Bosnia and Herzegovina.Atmos Pollut Res2022
34861173Evolving use of ancestry, ethnicity, and race in genetics research-A survey spanning seven decades.Am J Hum Genet2021
34861173Evolving use of ancestry, ethnicity, and race in genetics research-A survey spanning seven decades.Am J Hum Genet2021
32349758Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records.BMC Med Inform Decis Mak2020
32349758Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records.BMC Med Inform Decis Mak2020
33083825Better synonyms for enriching biomedical search.J Am Med Inform Assoc2020
33083825Better synonyms for enriching biomedical search.J Am Med Inform Assoc2020
31020319LitSense: making sense of biomedical literature at sentence level.Nucleic Acids Res2019
31020319LitSense: making sense of biomedical literature at sentence level.Nucleic Acids Res2019
31267135PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database.Database (Oxford)2019
31267135PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database.Database (Oxford)2019
29893755PubMed Phrases, an open set of coherent phrases for searching biomedical literature.Sci Data2018
29893755PubMed Phrases, an open set of coherent phrases for searching biomedical literature.Sci Data2018
30012087Discovering themes in biomedical literature using a projection-based algorithm.BMC Bioinformatics2018
30010750A Field Sensor: computing the composition and intent of PubMed queries.Database (Oxford)2018
30012087Discovering themes in biomedical literature using a projection-based algorithm.BMC Bioinformatics2018
30010750A Field Sensor: computing the composition and intent of PubMed queries.Database (Oxford)2018
28986328Bridging the gap: Incorporating a semantic similarity measure for effectively mapping PubMed queries to documents.J Biomed Inform2017
28986328Bridging the gap: Incorporating a semantic similarity measure for effectively mapping PubMed queries to documents.J Biomed Inform2017
28077563The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions.Database (Oxford)2017
28077563The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions.Database (Oxford)2017
27515823BioC viewer: a web-based tool for displaying and merging annotations in BioC.Database (Oxford)2016
27288493Meshable: searching PubMed abstracts by utilizing MeSH and MeSH-derived topical terms.Bioinformatics2016
27515823BioC viewer: a web-based tool for displaying and merging annotations in BioC.Database (Oxford)2016
27589962BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.Database (Oxford)2016
27589962BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.Database (Oxford)2016
27288493Meshable: searching PubMed abstracts by utilizing MeSH and MeSH-derived topical terms.Bioinformatics2016
25796456Extracting drug-drug interactions from literature using a rich feature-based linear kernel approach.J Biomed Inform2015
25887671Identifying named entities from PubMed for enriching semantic categories.BMC Bioinformatics2015
25796456Extracting drug-drug interactions from literature using a rich feature-based linear kernel approach.J Biomed Inform2015
26551594Optimizing graph-based patterns to extract biomedical events from the literature.BMC Bioinformatics2015
26551594Optimizing graph-based patterns to extract biomedical events from the literature.BMC Bioinformatics2015
25887671Identifying named entities from PubMed for enriching semantic categories.BMC Bioinformatics2015
24935050Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus.Database (Oxford)2014
28758138Author Name Disambiguation for PubMed.J Assoc Inf Sci Technol2014
25954431Stochastic Gradient Descent and the Prediction of MeSH for PubMed Records.AMIA Annu Symp Proc2014
24914232Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora.Database (Oxford)2014
24852177BioCreative-IV virtual issue.Database (Oxford)2014
24980129BioC interoperability track overview.Database (Oxford)2014
24935050Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus.Database (Oxford)2014
25075115Retro: concept-based clustering of biomedical topical sets.Bioinformatics2014
24961236BioC implementations in Go, Perl, Python and Ruby.Database (Oxford)2014
25052701Assisting manual literature curation for protein-protein interactions using BioQRator.Database (Oxford)2014
28758138Author Name Disambiguation for PubMed.J Assoc Inf Sci Technol2014
25954431Stochastic Gradient Descent and the Prediction of MeSH for PubMed Records.AMIA Annu Symp Proc2014
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Collaborators

National Center for Biotechnology Information, National Institutes of Health.
Co-authored papers 28
Co-authored papers 20
Co-authored papers 20
Co-authored papers 12
Georgetown University Medical Center
Co-authored papers 6
Spanish National Cancer Research Centre
Co-authored papers 6
Co-authored papers 5
Institute for Research in Immunology and Cancer (IRIC), University of Montreal
Co-authored papers 5
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Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 5
University of Delaware
Co-authored papers 5
Co-authored papers 4
University of Colorado Denver
Co-authored papers 4
National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre
Co-authored papers 4
University of Delaware
Co-authored papers 4
Co-authored papers 4
The MITRE Corporation
Co-authored papers 3
National Institutes of Health
Co-authored papers 3
Institute for Research in Immunology and Cancer (IRIC), Universite de Montreal
Co-authored papers 3
Co-authored papers 3
Co-authored papers 3
Co-authored papers 3
National Center for Biotechnology Information
Co-authored papers 3
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 3
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 3
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 3
Co-authored papers 3
Co-authored papers 3
University of Massachusetts Medical School
Co-authored papers 2
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 2