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Author Details

Stephen K Burley
The State University of New Jersey
1982
304
89
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36495283An idea to explore: How an interdisciplinary undergraduate course exploring a global health challenge in molecular detail enabled science communication and collaboration in diverse audiences.Biochem Mol Biol Educ2023
37561405Announcing the launch of Protein Data Bank China as an Associate Member of the Worldwide Protein Data Bank Partnership.Acta Crystallogr D Struct Biol2023
37613801Assessing and Maximizing the Quality of 3DEM Structure Data at the Worldwide Protein Data Bank.Microsc Microanal2023
37922863The next decade in structural biology.Structure2023
36778399A comprehensive survey of coronaviral main protease active site diversity in 3D: Identifying and analyzing drug discovery targets in search of broad specificity inhibitors for the next coronavirus pandemic.bioRxiv2023
36738985RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances.J Mol Biol2023
36828268ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.J Mol Biol2023
36420884RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning.Nucleic Acids Res2023
34676613RCSB Protein Data Bank: Celebrating 50â¿¿years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D.Protein Sci2022
35511693Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection.Mol Biol Evol2022
35547764mTOR regulates aerobic glycolysis through NEAT1 and nuclear paraspeckle-mediated mechanism in hepatocellular carcinoma.Theranostics2022
35801924Exploring protein symmetry at the RCSB Protein Data Bank.Emerg Top Life Sci2022
35543462RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies.Bioinformatics2022
35460671PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology.J Mol Biol2022
35623230Amino acids control blood glucose levels through mTOR signaling.Eur J Cell Biol2022
36474933Electron microscopy holdings of the Protein Data Bank: the impact of the resolution revolution, new validation tools, and implications for the future.Biophys Rev2022
35961013A roadmap for the functional annotation of protein families: a community perspective.Database (Oxford)2022
36291635Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students.Biomolecules2022
35948649Molecular explorations of cancer biology and therapeutics at PDB-101.Oncogene2022
35204309Nuclear SOD1 in Growth Control, Oxidative Stress Response, Amyotrophic Lateral Sclerosis, and Cancer.Antioxidants (Basel)2022
35026162Simplified quality assessment for small-molecule ligands in the Protein Data Bank.Structure2022
34864908RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB.Bioinformatics2022
34580920Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first 6 months of the COVID-19 pandemic.Proteins2022
34601771PDB-101: Educational resources supporting molecular explorations through biology and medicine.Protein Sci2022
34739839RCSB Protein Data Bank resources for structure-facilitated design of mRNA vaccines for existing and emerging viral pathogens.Structure2022
33211854RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.Nucleic Acids Res2021
33744282Impact of structural biologists and the Protein Data Bank on small-molecule drug discovery and development.J Biol Chem2021
33758865Design and proof-of-concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain.bioRxiv2021
33561464Toward improving androgen receptor-targeted therapies in male-dominant hepatocellular carcinoma.Drug Discov Today2021
33657417Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank.Structure2021
34874637Predicting Proteome-Scale Protein Structure with Artificial Intelligence.N Engl J Med2021
34931193Structural models of SARS-CoV-2 Omicron variant in complex with ACE2 receptor or antibodies suggest altered binding interfaces.bioRxiv2021
34429326mTORC1 Promotes ARID1A Degradation and Oncogenic Chromatin Remodeling in Hepatocellular Carcinoma.Cancer Res2021
34676381Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation Tools.bioRxiv2021
33984281Open-access data: A cornerstone for artificial intelligence approaches to protein structure prediction.Structure2021
34060472Targeting a cell surface vitamin D receptor on tumor-associated macrophages in triple-negative breast cancer.Elife2021
33956157Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures.Nucleic Acids Res2021
34234013Design and proof of concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain.Proc Natl Acad Sci U S A2021
33978738Modernized uniform representation of carbohydrate molecules in the Protein Data Bank.Glycobiology2021
33950382The Protein Data Bank Archive.Methods Mol Biol2021
33404533High-performance macromolecular data delivery and visualization for the web. Corrigendum.Acta Crystallogr D Struct Biol2021
33313665RCSB Protein Data Bank 1D tools and services.Bioinformatics2021
33187978JAK inhibition reduces SARS-CoV-2 liver infectivity and modulates inflammatory responses to reduce morbidity and mortality.Sci Adv2021
33186584RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive.J Mol Biol2021
31531901RCSB Protein Data Bank: Enabling biomedical research and drug discovery.Protein Sci2020
32068073Impact of the Protein Data Bank on antineoplastic approvals.Drug Discov Today2020
33284792Real-time structural motif searching in proteins using an inverted index strategy.PLoS Comput Biol2020
33075050BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management.PLoS Comput Biol2020
33263322High-performance macromolecular data delivery and visualization for the web.Acta Crystallogr D Struct Biol2020
32939013RCSB Protein Data Bank tools for 3D structure-guided cancer research: human papillomavirus (HPV) case study.Oncogene2020
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Collaborators

Eli Lilly and Co.
Co-authored papers 41
Albert Einstein College of Medicine
Co-authored papers 40
Brookhaven National Laboratory
Co-authored papers 39
The State University of New Jersey
Co-authored papers 33
University of California San Francisco
Co-authored papers 29
Albert Einstein College of Medicine
Co-authored papers 29
The State University of New Jersey
Co-authored papers 28
The State University of New Jersey
Co-authored papers 22
The State University of New Jersey
Co-authored papers 22
The State University of New Jersey
Co-authored papers 21
European Bioinformatics Institute
Co-authored papers 20
University of California San Diego
Co-authored papers 19
The State University of New Jersey
Co-authored papers 17
The State University of New Jersey
Co-authored papers 16
The State University of New Jersey
Co-authored papers 16
The State University of New Jersey
Co-authored papers 16
The State University of New Jersey
Co-authored papers 16
The State University of New Jersey
Co-authored papers 14
University of Wisconsin-Madison
Co-authored papers 14
Co-authored papers 13
Texas A&M University, College Station
Co-authored papers 13
The State University of New Jersey
Co-authored papers 12
NYU Langone Hospital - Brooklyn Brooklyn
Co-authored papers 12
The State University of New Jersey
Co-authored papers 12
Brookhaven National Laboratory
Co-authored papers 11
the Rockefeller University
Co-authored papers 11
New York SGX Research Center for Structural Genomics
Co-authored papers 11
Institute for Protein Research, Osaka University
Co-authored papers 10
University of California San Diego
Co-authored papers 10
Institute for Quantitative Biomedicine, State University of New Jersey
Co-authored papers 10