Author details

Full Name

Kyle M Miller

Affiliation

The University of Texas at Austin

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

Nevan J Krogan (CM4AI)

PMID	Paper Title	Journal Title	Published Year
35331626	Histone H2A variants: Diversifying chromatin to ensure genome integrity.	Semin Cell Dev Biol	2023
36983041	Clinical and Mechanistic Implications of R-Loops in Human Leukemias.	Int J Mol Sci	2023
37070200	A novel role of TRIM28 B box domain in L1 retrotransposition and ORF2p-mediated cDNA synthesis.	Nucleic Acids Res	2023
36255636	Single-Cell Analysis of Histone Acetylation Dynamics at Replication Forks Using PLA and SIRF.	Methods Mol Biol	2023
35253893	ZMYM2 restricts 53BP1 at DNA double-strand breaks to favor BRCA1 loading and homologous recombination.	Nucleic Acids Res	2022
35532219	Joining the PARty: PARP Regulation of KDM5A during DNA Repair (and Transcription?).	Bioessays	2022
36265488	RAD51AP1 regulates ALT-HDR through chromatin-directed homeostasis of TERRA.	Mol Cell	2022
33279952	Emerging roles of RNA modifications in genome integrity.	Brief Funct Genomics	2021
34548613	Bromodomain proteins: protectors against endogenous DNA damage and facilitators of genome integrity.	Exp Mol Med	2021
34659365	Making Connections: Integrative Signaling Mechanisms Coordinate DNA Break Repair in Chromatin.	Front Genet	2021
33941775	DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation.	Nat Commun	2021
34003252	Poly(ADP-ribose) binding and macroH2A mediate recruitment and functions of KDM5A at DNA lesions.	J Cell Biol	2021
30620620	FKBP25 participates in DNA double-strand break repair.	Biochem Cell Biol	2020
32808652	Making it or breaking it: DNA methylation and genome integrity.	Essays Biochem	2020
32966758	PCAF-Mediated Histone Acetylation Promotes Replication Fork Degradation by MRE11 and EXO1 in BRCA-Deficient Cells.	Mol Cell	2020
32675241	Direct readout of heterochromatic H3K9me3 regulates DNMT1-mediated maintenance DNA methylation.	Proc Natl Acad Sci U S A	2020
30652105	Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways.	Microb Cell	2019
31753913	Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity.	Genes Dev	2019
31395347	Histone methylation and the DNA damage response.	Mutat Res Rev Mutat Res	2019
31331819	Non-canonical DNA/RNA structures during Transcription-Coupled Double-Strand Break Repair: Roadblocks or Bona fide repair intermediates?	DNA Repair (Amst)	2019
31127569	In Time and Space: Laser Microirradiation and the DNA Damage Response.	Methods Mol Biol	2019
31164001	Preserving genome integrity and function: the DNA damage response and histone modifications.	Crit Rev Biochem Mol Biol	2019
29370947	Caught with One's Zinc Fingers in the Genome Integrity Cookie Jar.	Trends Genet	2018
30073532	CRISPR/Cas9 Gene Editing of Human Histone H2A Variant H2AX and MacroH2A.	Methods Mol Biol	2018
30523780	Sae2/CtIP prevents R-loop accumulation in eukaryotic cells.	Elife	2018
30268364	Fluorescent fusions of the N protein of phage Mu label DNA damage in living cells.	DNA Repair (Amst)	2018
30393775	Arginine starvation kills tumor cells through aspartate exhaustion and mitochondrial dysfunction.	Commun Biol	2018
30388705	KDM5A Regulates a Translational Program that Controls p53 Protein Expression.	iScience	2018
29393731	Double duty: ZMYND8 in the DNA damage response and cancer.	Cell Cycle	2018
28847823	Bromodomain proteins: repairing DNA damage within chromatin.	Philos Trans R Soc Lond B Biol Sci	2017
28474855	Chromatin Regulates Genome Targeting with Cisplatin.	Angew Chem Int Ed Engl	2017
28242625	ZMYM3 regulates BRCA1 localization at damaged chromatin to promote DNA repair.	Genes Dev	2017
28572115	Histone demethylase KDM5A regulates the ZMYND8-NuRD chromatin remodeler to promote DNA repair.	J Cell Biol	2017
27006338	Chronic oxidative stress promotes H2AX protein degradation and enhances chemosensitivity in breast cancer patients.	EMBO Mol Med	2016
27631103	Acetylation Reader Proteins: Linking Acetylation Signaling to Genome Maintenance and Cancer.	PLoS Genet	2016
27240007	The nucleosome: orchestrating DNA damage signaling and repair within chromatin.	Biochem Cell Biol	2016
26884156	Single-molecule imaging reveals the mechanism of Exo1 regulation by single-stranded DNA binding proteins.	Proc Natl Acad Sci U S A	2016
25593309	Screen identifies bromodomain protein ZMYND8 in chromatin recognition of transcription-associated DNA damage that promotes homologous recombination.	Genes Dev	2015
26508657	Ubiquitin-Activated Interaction Traps (UBAITs) identify E3 ligase binding partners.	EMBO Rep	2015
26030852	ATM regulation of IL-8 links oxidative stress to cancer cell migration and invasion.	Elife	2015
25642960	Mammalian polymerase Î¸ promotes alternative NHEJ and suppresses recombination.	Nature	2015
24658350	Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks.	Nat Struct Mol Biol	2014
25311424	Unravelling the genomic targets of small molecules using high-throughput sequencing.	Nat Rev Genet	2014
24603765	Nucleosome acidic patch promotes RNF168- and RING1B/BMI1-dependent H2AX and H2A ubiquitination and DNA damage signaling.	PLoS Genet	2014
23109425	Systematic identification of functional residues in mammalian histone H2AX.	Mol Cell Biol	2013
24171103	Engineered proteins detect spontaneous DNA breakage in human and bacterial cells.	Elife	2013
23927873	Mammalian DNA repair: HATs and HDACs make their mark through histone acetylation.	Mutat Res	2013
22306580	Small-molecule-induced DNA damage identifies alternative DNA structures in human genes.	Nat Chem Biol	2012
22435814	Histone marks: repairing DNA breaks within the context of chromatin.	Biochem Soc Trans	2012
22115396	G-quadruplexes: selective DNA targeting for cancer therapeutics?	Expert Rev Clin Pharmacol	2011

1 - 50 of 67

Parasvi S Patel

Princess Margaret Cancer Centre, University Health Network

Career Start Year 2016

Number of shared co-authors 2

Raghuvar Dronamraju

University of North Carolina at Chapel Hill School of Medicine

Career Start Year 2009

Number of shared co-authors 4

Scott B Rothbart

Van Andel Institute

Career Start Year 2009

Number of shared co-authors 7

Aude Gu??nol??

CNRS, Universite de Toulouse

Career Start Year 2009

Number of shared co-authors 5

Capucine Van Rechem

Stanford University School of Medicine

Career Start Year 2007

Number of shared co-authors 2

Yue Lu

The University of Texas MD Anderson Cancer Center

Career Start Year 2006

Number of shared co-authors 0

Andreas Mund

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 2006

Number of shared co-authors 2

Thomas Costelloe

Leiden University Medical Center

Career Start Year 2006

Number of shared co-authors 0

J Peter Svensson

Karolinska Institutet

Career Start Year 2005

Number of shared co-authors 5

Cheng-Fu Kao

Institute of Cellular and Organismic Biology

Career Start Year 2003

Number of shared co-authors 4

Joanna I Loizou

Center for Cancer Research, Comprehensive Cancer Centre, Medical University of Vienna

Career Start Year 2002

Number of shared co-authors 1

Ashby J Morrison

Stanford University

Career Start Year 2001

Number of shared co-authors 7

Haico van Attikum

Leiden University Medical Center

Career Start Year 2001

Number of shared co-authors 6

Erin M Green

University of Maryland Baltimore County

Career Start Year 2001

Number of shared co-authors 3

Junjie Chen

The University of Texas MD Anderson Cancer Center

Career Start Year 2000

Number of shared co-authors 1

Claudia Lukas

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1999

Number of shared co-authors 2

Dipanjan Chowdhury

Dana-Farber Cancer Institute

Career Start Year 1999

Number of shared co-authors 7

Xiaolan Zhao

Memorial Sloan-Kettering Cancer Center

Career Start Year 1998

Number of shared co-authors 6

Marcus B Smolka

Weill Institute for Cell and Molecular Biology, Cornell University

Career Start Year 1998

Number of shared co-authors 3

Thomas Helleday

The University of Sheffield

Career Start Year 1998

Number of shared co-authors 3

Siavash K Kurdistani

David Geffen School of Medicine, University of California los angeles

Career Start Year 1998

Number of shared co-authors 8

Aaron Aslanian

Salk Institute for Biological Studies

Career Start Year 1998

Number of shared co-authors 1

Michael-Christopher Keogh

EpiCypher Inc.

Career Start Year 1997

Number of shared co-authors 20

Agata Smogorzewska

Instituto de Investigacion Sanitaria Hospital 12 de Octubre (imas12)

Career Start Year 1997

Number of shared co-authors 0

Shiaw-Yih Lin

The University of Texas MD Anderson Cancer Center

Career Start Year 1996

Number of shared co-authors 0

Simon J Boulton

The Francis Crick Institute

Career Start Year 1996

Number of shared co-authors 2

Ali Shilatifard

Northwestern University Feinberg School of Medicine

Career Start Year 1991

Number of shared co-authors 12

Jacques C??t??

Centre Hospitalier Universitaire (CHU) de Quebec-Universite Laval Research Center

Career Start Year 1987

Number of shared co-authors 9

Ashok R Venkitaraman

University of Cambridge, Hutchison Research Centre

Career Start Year 1982

Number of shared co-authors 0

Stephen J Elledge

Howard Hughes Medical Institute, Brigham and Women's Hospital, Harvard Medical School

Career Start Year 1982

Number of shared co-authors 8

row(s) 1 - 30 of 30

Stephen P Jackson

Mission Therapeutics Ltd. Glenn Berge Building

Co-authored papers 8

Ga??lle Legube

CNRS, Universite de Toulouse

Co-authored papers 5

Tanya T Paull

University of Texas at Austin

Co-authored papers 4

David P Toczyski

University of California San Francisco

Co-authored papers 3

Nancy L Maas

University of Pennsylvania

Co-authored papers 3

Brian D Strahl

University of North Carolina

Co-authored papers 2

Or Gozani

Stanford University

Co-authored papers 2

Daniel Durocher

The Lunenfeld-Tannenbaum Research Institute, Mount Sinai Hospital

Co-authored papers 2

Dinshaw J Patel

Memorial Sloan-Kettering Cancer Center

Co-authored papers 2

Maya Schuldiner

The Weizmann Institute of Science

Co-authored papers 1

Sean R Collins

University of California davis

Co-authored papers 1

Ji-Hoon Lee

Jeonbuk National University

Co-authored papers 1

Pawe?? Zawadzki

MNM Bioscience Inc.

Co-authored papers 1

Zhiguo Zhang

Institute for Cancer Genetics, Columbia University Irving Medical Center

Co-authored papers 1

Charles Boone

University of Toronto

Co-authored papers 1

Richard D Kolodner

Ludwig Institute for Cancer Research San Diego Branch

Co-authored papers 1

C David Allis

The Rockefeller University

Co-authored papers 1

Shelley L Berger

Penn Epigenetics Institute, Perelman School of Medicine

Co-authored papers 1

Nevan J Krogan (CM4AI)

University of California San Francisco

Co-authored papers 1

Qiong Fu

Center for Cancer Research, National Cancer Institute, National Institutes of Health

Co-authored papers 1

Benjamin Cheng

Co-authored papers 1

James E Haber

Brandeis University

Co-authored papers 1

Nathan S Abell

Co-authored papers 1

Brenda J Andrews

University of Toronto

Co-authored papers 1

Dmitry A Gordenin

National Institute of Environmental Health Sciences (NIEHS)

Co-authored papers 1

Junhong Han

West China Hospital, Sichuan University

Co-authored papers 1

Andrew Emili

Boston University School of Medicine, Boston University

Co-authored papers 1

Yinsheng Wang

Co-authored papers 1

Clement S Chu

Counsyl Inc.

Co-authored papers 1

Taosheng Chen

St. Jude Children's Research Hospital

Co-authored papers 1

1 - 30

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