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Author Details

Mark A van de Wiel
Amsterdam University Medical Centers (Amsterdam UMC)
2001
129
37
PMIDPaper TitleJournal TitlePublished Year
36657208Magnetic resonance imaging based radiomics prediction of Human Papillomavirus infection status and overall survival in oropharyngeal squamous cell carcinoma.Oral Oncol2023
37951587Penalized regression with multiple sources of prior effects.Bioinformatics2023
37539043Multi-scale spatial modeling of immune cell distributions enables survival prediction in primary central nervous system lymphoma.iScience2023
37101151ecpc: an R-package for generic co-data models for high-dimensional prediction.BMC Bioinformatics2023
36574026Radiological correlates of episodes of acute decline in the leukodystrophy vanishing white matter.Neuroradiology2023
34605346Dynamics of methylated cell-free DNA in the urine of non-small cell lung cancer patients.Epigenetics2022
38013849Fast Marginal Likelihood Estimation of Penalties for Group-Adaptive Elastic Net.J Comput Graph Stat2022
35730912Semi-supervised empirical Bayes group-regularized factor regression.Biom J2022
35853977Fecal amine metabolite analysis before onset of severe necrotizing enterocolitis in preterm infants: a prospective case-control study.Sci Rep2022
36232432Fcα Receptor-1-Activated Monocytes Promote B Lymphocyte Migration and IgA Isotype Switching.Int J Mol Sci2022
32437519Predictive and interpretable models via the stacked elastic net.Bioinformatics2021
33504902Detection of colorectal cancer in urine using DNA methylation analysis.Sci Rep2021
34873056Predicting patient response with models trained on cell lines and patient-derived xenografts by nonlinear transfer learning.Proc Natl Acad Sci U S A2021
34438466Flexible co-data learning for high-dimensional prediction.Stat Med2021
34671028Bayesian log-normal deconvolution for enhanced in silico microdissection of bulk gene expression data.Nat Commun2021
34510716A panel of DNA methylation markers for the classification of consensus molecular subtypes 2 and 3 in patients with colorectal cancer.Mol Oncol2021
34831173Distinct Metabolomic Signatures in Preclinical and Obstructive Hypertrophic Cardiomyopathy.Cells2021
31886488Adaptive group-regularized logistic elastic net regression.Biostatistics2021
33155717Drug sensitivity prediction with normal inverse Gaussian shrinkage informed by external data.Biom J2021
32500196Outcome prediction of head and neck squamous cell carcinoma by MRI radiomic signatures.Eur Radiol2020
31784980Proteins in stool as biomarkers for non-invasive detection of colorectal adenomas with high risk of progression.J Pathol2020
33257915Lung ultrasound findings in patients with novel SARS-CoV-2.ERJ Open Res2020
31007342Learning from a lot: Empirical Bayes for high-dimensional model-based prediction.Scand Stat Theory Appl2019
30192375Genome-wide microRNA analysis of HPV-positive self-samples yields novel triage markers for early detection of cervical cancer.Int J Cancer2019
31234833RNA-Seq in 296 phased trios provides a high-resolution map of genomic imprinting.BMC Biol2019
31443224Unravelling the Diagnostic Dilemma: A MicroRNA Panel of Circulating MiR-16 and MiR-877 as A Diagnostic Classifier for Distal Bile Duct Tumors.Cancers (Basel)2019
29632006Identification and Validation of a 3-Gene Methylation Classifier for HPV-Based Cervical Screening on Self-Samples.Clin Cancer Res2018
30075027Combination of a six microRNA expression profile with four clinicopathological factors for response prediction of systemic treatment in patients with advanced colorectal cancer.PLoS One2018
28073760Better diagnostic signatures from RNAseq data through use of auxiliary co-data.Bioinformatics2017
28408966Gene Network Reconstruction using Global-Local Shrinkage Priors.Ann Appl Stat2017
28393396An empirical Bayes approach to network recovery using external knowledge.Biom J2017
29281963Improved high-dimensional prediction with Random Forests by the use of co-data.BMC Bioinformatics2017
28938638Prognostic modeling of oral cancer by gene profiles and clinicopathological co-variables.Oncotarget2017
28951883Blood-based metabolic signatures in Alzheimer's disease.Alzheimers Dement (Amst)2017
28830466Methods for significance testing of categorical covariates in logistic regression models after multiple imputation: power and applicability analysis.BMC Med Res Methodol2017
28826607A Strategy to Find Suitable Reference Genes for miRNA Quantitative PCR Analysis and Its Application to Cervical Specimens.J Mol Diagn2017
26951498Testing for association between RNA-Seq and high-dimensional data.BMC Bioinformatics2016
26432753Molecular imaging of aurora kinase A (AURKA) expression: Synthesis and preclinical evaluation of radiolabeled alisertib (MLN8237).Nucl Med Biol2016
26497206A prognostic classifier for patients with colorectal cancer liver metastasis, based on AURKA, PTGS2 and MMP9.Oncotarget2016
26365903Better prediction by use of co-data: adaptive group-regularized ridge regression.Stat Med2016
27729614Genomic profiling of stage II and III colon cancers reveals APC mutations to be associated with survival in stage III colon cancer patients.Oncotarget2016
27782817Assessment of predictive performance in incomplete data by combining internal validation and multiple imputation.BMC Med Res Methodol2016
27919231Erratum to: Assessment of predictive performance in incomplete data by combining internal validation and multiple imputation.BMC Med Res Methodol2016
27286451Reduced genomic tumor heterogeneity after neoadjuvant chemotherapy is related to favorable outcome in patients with esophageal adenocarcinoma.Oncotarget2016
24962140M-CSF priming of osteoclast precursors can cause osteoclastogenesis-insensitivity, which can be prevented and overcome on bone.J Cell Physiol2015
26436952MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing.Oncogenesis2015
26375816High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer.PLoS One2015
25861213HCsnip: An R Package for Semi-supervised Snipping of the Hierarchical Clustering Tree.Cancer Inform2015
25592847Semi-supervised adaptive-height snipping of the hierarchical clustering tree.BMC Bioinformatics2015
24227199DNA copy number aberrations in endobronchial lesions: a validated predictor for cancer.Thorax2014
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Collaborators

Bauke Ylstra
Cancer Center Amsterdam, Vrije Universiteit Amsterdam
Co-authored papers 46
Gerrit A Meijer
The Netherlands Cancer Institute
Co-authored papers 43
Remond J A Fijneman
The Netherlands Cancer Institute
Co-authored papers 12
Ruud H Brakenhoff
Vrije Universiteit Amsterdam
Co-authored papers 9
Charles R Leemans
Location Vrije Universiteit Amsterdam
Co-authored papers 8
Meike de Wit
The Netherlands Cancer Institute
Co-authored papers 5
Oscar Krijgsman
The Netherlands Cancer Institute
Co-authored papers 4
Lodewyk F A Wessels
University Medical Centre Mannheim, University of Heidelberg
Co-authored papers 3
Fredrik Pont??n
Uppsala University
Co-authored papers 3
Marit Holden
University of Mainz
Co-authored papers 2
Simone Wahl
Co-authored papers 2
Manon van Engeland
Maastricht University Medical Center
Co-authored papers 2
Wim Van Criekinge
Ghent University
Co-authored papers 2
Jeroen A C M Goos
Karolinska Institutet
Co-authored papers 2
Enrico Glaab
University of Luxembourg
Co-authored papers 2
Christian Benner
Institute for Molecular Medicine Finland (FIMM), University of Helsinki
Co-authored papers 2
Connie R Jimenez
Co-authored papers 2
Arnoldo Frigessi
University of Oslo
Co-authored papers 2
Ronald Boellaard
Cancer Center Amsterdam, Vrije Universiteit Amsterdam
Co-authored papers 2
Paul J van Diest
University Medical Center Utrecht
Co-authored papers 2
Barbara Thorand
Co-authored papers 2
Heidi Lyng
Radiumhospitalet, Oslo University Hosptial
Co-authored papers 2
Ingrid K Glad
University of Oslo
Co-authored papers 2
Tito Poli
University Hospital of Parma
Co-authored papers 1
Ana Osorio
Familial Cancer Clinical Unit, Spanish National Cancer Research Centre
Co-authored papers 1
Jakob B A Crusius
Co-authored papers 1
Jes??s Garc??a-Donas
HM Hospitales-Centro Integral Oncologico Clara Campal
Co-authored papers 1
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 1
Eivind Hovig
Center for Bioinformatics, University of Oslo
Co-authored papers 1
Cornelis J H van de Velde
Leiden University Medical Center: Leids Universitair Medisch Centrum.
Co-authored papers 1
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