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Author Details

Yu Qian
J. Craig Venter Institute
2008
21
13
PMIDPaper TitleJournal TitlePublished Year
36018232FastMix: a versatile data integration pipeline for cell type-specific biomarker inference.Bioinformatics2022
33690224A system-view of Bordetella pertussis booster vaccine responses in adults primed with whole-cell versus acellular vaccine in infancy.JCI Insight2021
32529184Unbiased analysis of peripheral blood mononuclear cells reveals CD4 T cell response to RSV matrix protein.Vaccine X2020
31691488Machine Learning of Discriminative Gate Locations for Clinical Diagnosis.Cytometry A2020
31045577Differential transcriptome and development of human peripheral plasma cell subsets.JCI Insight2019
28506846Allergen-specific immunotherapy modulates the balance of circulating Tfh and Tfr cells.J Allergy Clin Immunol2018
29665244DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data.Cytometry A2018
28069807An Integrated Workflow To Assess Technical and Biological Variability of Cell Population Frequencies in Human Peripheral Blood by Flow Cytometry.J Immunol2017
29128077Automated Analysis of Clinical Flow Cytometry Data: A Chronic Lymphocytic Leukemia Illustration.Clin Lab Med2017
29322913Cell type discovery and representation in the era of high-content single cell phenotyping.BMC Bioinformatics2017
28798746Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells.Front Immunol2017
26861911Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium.Sci Rep2016
26274018Mapping cell populations in flow cytometry data for cross-sample comparison using the Friedman-Rafsky test statistic as a distance measure.Cytometry A2016
26447924A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes.Cytometry A2016
23822732GenePattern flow cytometry suite.Source Code Biol Med2013
22431383FCSTrans: an open source software system for FCS file conversion and data transformation.Cytometry A2012
23087687Advances in human B cell phenotypic profiling.Front Immunol2012
20460173Toward an ontology-based framework for clinical research databases.J Biomed Inform2011
20839340Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data.Cytometry B Clin Cytom2010
19531228FuGEFlow: data model and markup language for flow cytometry.BMC Bioinformatics2009
18752282MIFlowCyt: the minimum information about a Flow Cytometry Experiment.Cytometry A2008
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Collaborators

Richard H Scheuermann
J. Craig Venter Institute
Co-authored papers 20
Ryan R Brinkman
University of British Columbia
Co-authored papers 5
Y Megan Kong
Centro Hospitalar Conde de Sao Januario
Co-authored papers 4
Bjoern Peters
University of Washington School of Medicine
Co-authored papers 4
Alessandro Sette
Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology
Co-authored papers 4
Josef Spidlen
British Columbia Cancer Research Center
Co-authored papers 3
Alexandra J Lee
University of Pennsylvania
Co-authored papers 3
Peter Wilkinson
Case Western Reserve University
Co-authored papers 3
Garry P Nolan
Stanford University School of Medicine
Co-authored papers 2
Olga Tchuvatkina
Fox Chase Cancer Center, Temple University Health
Co-authored papers 2
Tobias R Kollmann
Telethon Kids Institute
Co-authored papers 2
Jamie A Lee
University of Texas Southwestern Medical Center
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Brian D Aevermann
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Bali Pulendran
Institute for Immunity, Stanford University School of Medicine, Stanford University
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Elizabeth Thomson
Northrop Grumman Health Solutions
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Maura Gasparetto
University of Colorado School of Medicine
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Raphael Gottardo
Fred Hutchinson Cancer Center
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Rafick-Pierre Sekaly
Pathology Advanced Translational Research Unit, Emory University School of Medicine
Co-authored papers 2
Jennifer Cai
University of Texas Southwestern Medical Center
Co-authored papers 2
James C S Wood
Comprehensive Cancer Center
Co-authored papers 1
Nicholas J Schork
University of California San Diego
Co-authored papers 1
Biruntha Selvaraj
Co-authored papers 1
Karin Breuer
Simon Fraser University
Co-authored papers 1
Carl Dahlke
Co-authored papers 1
Mohammad Jafar Taghiyar
University of British Columbia
Co-authored papers 1
Ted Liefeld
Moores Cancer Center, University of California San Diego
Co-authored papers 1
Elaine F Reed
University of California Los Angeles
Co-authored papers 1
Robert B Nussenblatt
National Eye Institute
Co-authored papers 1
Shannon K McWeeney
Oregon Health & Science University, University of California Berkeley
Co-authored papers 1
David R Karp
University of Texas Southwestern Medical Center
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Release 1.2