Author details

Full Name

Xinxia Peng

Affiliation

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
34634809	Coupling high-throughput mapping with proteomics analysis delineates cis-regulatory elements at high resolution.	Nucleic Acids Research	2022
34396406	Tumor Necrosis Factor Alpha-Induced Interleukin-1 Alpha Synthesis and Cell Death Is Increased in Mouse Epithelial Cells Infected With Chlamydia muridarum.	Journal of Infectious Diseases	2021
34228762	Interleukin-15 response signature predicts RhCMV/SIV vaccine efficacy.	PLoS Pathog	2021
34102084	Inferring environmental transmission using phylodynamics: a case-study using simulated evolution of an enteric pathogen.	Journal of the Royal Society Interface	2021
33455360	Porcine Vocal Fold Lamina Propria-Derived Biomaterials Modulate TGF-Î²1-Mediated Fibroblast Activation in Vitro.	ACS Biomaterials Science and Engineering	2020
32376650	Systematic Profiling of Full-Length Ig and TCR Repertoire Diversity in Rhesus Macaque through Long Read Transcriptome Sequencing.	J Immunol	2020
31409692	Circulating tumor cells exit circulation while maintaining multicellularity, augmenting metastatic potential.	Journal of Cell Science	2019
31836755	Author Correction: Macrophage-associated wound healing contributes to African green monkey SIV pathogenesis control.	Nat Commun	2019
31704931	Macrophage-associated wound healing contributes to African green monkey SIV pathogenesis control.	Nat Commun	2019
31434737	Fc Gamma Receptor Polymorphisms Modulated the Vaccine Effect on HIV-1 Risk in the HVTN 505 HIV Vaccine Trial.	J Virol	2019
30854394	Simultaneous profiling of sexually transmitted bacterial pathogens, microbiome, and concordant host response in cervical samples using whole transcriptome sequencing analysis.	Microbial Cell	2019
31204101	Fc Characteristics Mediate Selective Placental Transfer of IgG in HIV-Infected Women.	Cell	2019
30161231	Noncanonical placental Fc receptors: What is their role in modulating transplacental transfer of maternal IgG?	PLoS Pathogens	2018
29053596	Elucidating the Role of Host Long Non-Coding RNA during Viral Infection: Challenges and Paths Forward.	Vaccines	2017
28967519	Evaluation of the innate immune responses to influenza and live-attenuated influenza vaccine infection in primary differentiated human nasal epithelial cells.	Vaccine	2017
26867183	Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism.	Cell Host Microbe	2016
27015273	FCGR2C Polymorphisms Associated with HIV-1 Vaccine Protection Are Linked to Altered Gene Expression of Fc-Î³ Receptors in Human B Cells.	PLoS One	2016
25392405	Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR).	Nucleic Acids Res	2015
24922324	Annotation of long non-coding RNAs expressed in collaborative cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts.	RNA Biol	2014
25402615	The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease.	Nat Biotechnol	2014
24810475	Assessment and improvement of Indian-origin rhesus macaque and Mauritian-origin cynomolgus macaque genome annotations using deep transcriptome sequencing data.	J Med Primatol	2014
24807713	Deep transcriptional sequencing of mucosal challenge compartment from rhesus macaques acutely infected with simian immunodeficiency virus implicates loss of cell adhesion preceding immune activation.	J Virol	2014
24902603	Genomic profiling of collaborative cross founder mice infected with respiratory viruses reveals novel transcripts and infection-related strain-specific gene and isoform expression.	G3 (Bethesda)	2014
24850744	Deep sequencing of HIV-infected cells: insights into nascent transcription and host-directed therapy.	J Virol	2014
25144235	Infection with MERS-CoV causes lethal pneumonia in the common marmoset.	PLoS Pathog	2014
23203872	The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics.	Nucleic Acids Res	2013
24109218	Next-generation sequence analysis of the genome of RFHVMn, the macaque homolog of Kaposi's sarcoma (KS)-associated herpesvirus, from a KS-like tumor of a pig-tailed macaque.	Journal of Virology	2013
22904078	Compression of next-generation sequencing reads aided by highly efficient de novo assembly.	Nucleic Acids Res	2012
22285831	A new approach to bias correction in RNA-Seq.	Bioinformatics	2012
21933919	Next-generation sequencing reveals HIV-1-mediated suppression of T cell activation and RNA processing and regulation of noncoding RNA expression in a CD4+ T cell line.	mBio	2011
21299648	SAP1 is a critical post-transcriptional regulator of infectivity in malaria parasite sporozoite stages.	Molecular Microbiology	2011
21360837	Effects of arginine on heat-induced aggregation of concentrated protein solutions.	Biotechnology Progress	2011
22086488	Integrative deep sequencing of the mouse lung transcriptome reveals differential expression of diverse classes of small RNAs in response to respiratory virus infection.	mBio	2011
20504916	Lethal dissemination of H5N1 influenza virus is associated with dysregulation of inflammation and lipoxin signaling in a mouse model of infection.	J Virol	2010
20978541	Unique signatures of long noncoding RNA expression in response to virus infection and altered innate immune signaling.	mBio	2010
19939913	The alpha/beta interferon receptor provides protection against influenza virus replication but is dispensable for inflammatory response signaling.	J Virol	2010
20071585	MicroRNA expression and virulence in pandemic influenza virus-infected mice.	J Virol	2010
19798428	Lethal influenza virus infection in macaques is associated with early dysregulation of inflammatory related genes.	PLoS Pathog	2009
19671175	Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers.	BMC Genomics	2009
19576841	Virus-host interactions: from systems biology to translational research.	Curr Opin Microbiol	2009
19534804	Host cell transcriptional profiling during malaria liver stage infection reveals a coordinated and sequential set of biological events.	BMC Genomics	2009
19461876	P58(IPK): a novel "CIHD" member of the host innate defense response against pathogenic virus infection.	PLoS Pathog	2009
18586738	Assessment and improvement of the Plasmodium yoelii yoelii genome annotation through comparative analysis.	Bioinformatics	2008
18710954	Distinct malaria parasite sporozoites reveal transcriptional changes that cause differential tissue infection competence in the mosquito vector and mammalian host.	Molecular and Cellular Biology	2008
18172196	A combined transcriptome and proteome survey of malaria parasite liver stages.	Proceedings of the National Academy of Sciences of the United States of America	2008