Author details

Full Name

Stephen-John Sammut

Affiliation

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37790315	Prediction of cancer treatment response from histopathology images through imputed transcriptomics.	Res Sq	2023
34875674	Multi-omic machine learning predictor of breast cancer therapy response.	Nature	2022
34902335	Residual cancer burden after neoadjuvant chemotherapy and long-term survival outcomes in breast cancer: a multicentre pooled analysis of 5161 patients.	Lancet Oncol	2022
34518533	DNA methylation landscapes of 1538 breast cancers reveal a replication-linked clock, epigenomic instability and cis-regulation.	Nat Commun	2021
34099718	The temporal mutational and immune tumour microenvironment remodelling of HER2-negative primary breast cancers.	NPJ Breast Cancer	2021
33353943	The molecular landscape of Asian breast cancers reveals clinically relevant population-specific differences.	Nat Commun	2020
31391323	Personalized circulating tumor DNA analysis to detect residual disease after neoadjuvant therapy in breast cancer.	Sci Transl Med	2019
30609936	Next Generation-Targeted Amplicon Sequencing (NG-TAS): an optimised protocol and computational pipeline for cost-effective profiling of circulating tumour DNA.	Genome Med	2019
30867590	Dynamics of breast-cancer relapse reveal late-recurring ER-positive genomic subgroups.	Nature	2019
29608913	Shallow whole genome sequencing for robust copy number profiling of formalin-fixed paraffin-embedded breast cancers.	Exp Mol Pathol	2018
29304755	Computational approach to discriminate human and mouse sequences in patient-derived tumour xenografts.	BMC Genomics	2018
28420412	Intersect-then-combine approach: improving the performance of somatic variant calling in whole exome sequencing data using multiple aligners and callers.	Genome Med	2017
28694015	Predicting treatment resistance and relapse through circulating DNA.	Breast	2017
28686534	New Model for Estimating Glomerular Filtration Rate in Patients With Cancer.	J Clin Oncol	2017
27980389	Prognostic Value of MammaPrint[Â®] in Invasive Lobular Breast Cancer.	Biomark Insights	2016
26729235	Integration of genomic, transcriptomic and proteomic data identifies two biologically distinct subtypes of invasive lobular breast cancer.	Sci Rep	2016
26862851	Brachyury identifies a class of enteroendocrine cells in normal human intestinal crypts and colorectal cancer.	Oncotarget	2016
27264733	Erratum: The somatic mutation profiles of 2,433 breast cancers refine their genomic and transcriptomic landscapes.	Nat Commun	2016
27161491	The somatic mutation profiles of 2,433 breast cancers refines their genomic and transcriptomic landscapes.	Nat Commun	2016
27641504	A Biobank of Breast Cancer Explants with Preserved Intra-tumor Heterogeneity to Screen Anticancer Compounds.	Cell	2016
25169931	A tumor DNA complex aberration index is an independent predictor of survival in breast and ovarian cancer.	Mol Oncol	2015
25251629	Pyogenic granuloma as a cutaneous adverse effect of vemurafenib.	New England Journal of Medicine	2014
25594029	A novel cohort of cancer-testis biomarker genes revealed through meta-analysis of clinical data sets.	Oncoscience (discontinued)	2014
25258084	Transcriptional diversity during lineage commitment of human blood progenitors.	Science	2014
25003467	Brachyury regulates proliferation of cancer cells via a p27Kip1-dependent pathway.	Oncotarget	2014
22080099	Management of febrile neutropenia in an acute oncology service.	QJM - Monthly Journal of the Association of Physicians	2012
22391365	Phytobezoar: a rare cause of late upper gastrointestinal perforation following gastric bypass surgery.	Annals of the Royal College of Surgeons of England	2012
22616108	ApiNATOMY: a novel toolkit for visualizing multiscale anatomy schematics with phenotype-related information.	Human Mutation	2012
21193525	Gastrin stimulates expression of plasminogen activator inhibitor-1 in gastric epithelial cells.	American Journal of Physiology - Gastrointestinal and Liver Physiology	2011
18713590	Frostbite following use of a commercially available cryotherapy device for the removal of viral warts.	Dermatology Online Journal	2008
18599586	Increased expression of the urokinase plasminogen activator system by Helicobacter pylori in gastric epithelial cells.	American Journal of Physiology - Gastrointestinal and Liver Physiology	2008
18193400	Relief of severe retro-orbital pain and vision improvement after optic-nerve decompression in polyostotic fibrous dysplasia: case report and review of the literature.	Child's Nervous System	2008
18344544	Pfam 10 years on: 10,000 families and still growing.	Brief Bioinform	2008
18039703	The Pfam protein families database.	Nucleic Acids Res	2008