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Author Details

Jie Hou
Saint Louis University
2015
51
18
PMIDPaper TitleJournal TitlePublished Year
36307986Genomic imbalance modulates transposable element expression in maize.Plant Commun2023
36307986Genomic imbalance modulates transposable element expression in maize.Plant Commun2023
37930021ComplexQA: a deep graph learning approach for protein complex structure assessment.Brief Bioinform2023
37693609A novel <i>f</i> -divergence based generative adversarial imputation method for scRNA-seq data analysis.bioRxiv2023
36682003Fast and automated protein-DNA/RNA macromolecular complex modeling from cryo-EM maps.Brief Bioinform2023
37693609A novel <i>f</i> -divergence based generative adversarial imputation method for scRNA-seq data analysis.bioRxiv2023
37930021ComplexQA: a deep graph learning approach for protein complex structure assessment.Brief Bioinform2023
36682003Fast and automated protein-DNA/RNA macromolecular complex modeling from cryo-EM maps.Brief Bioinform2023
34291486Improving protein tertiary structure prediction by deep learning and distance prediction in CASP14.Proteins2022
35641525Dosage-sensitive miRNAs trigger modulation of gene expression during genomic imbalance in maize.Nat Commun2022
34291486Improving protein tertiary structure prediction by deep learning and distance prediction in CASP14.Proteins2022
34161210Recent Progress of Machine Learning in Gene Therapy.Curr Gene Ther2022
34553747ZoomQA: residue-level protein model accuracy estimation with machine learning on sequential and 3D structural features.Brief Bioinform2022
34997647Effect of aneuploidy of a non-essential chromosome on gene expression in maize.Plant J2022
35641525Dosage-sensitive miRNAs trigger modulation of gene expression during genomic imbalance in maize.Nat Commun2022
34997647Effect of aneuploidy of a non-essential chromosome on gene expression in maize.Plant J2022
34553747ZoomQA: residue-level protein model accuracy estimation with machine learning on sequential and 3D structural features.Brief Bioinform2022
34161210Recent Progress of Machine Learning in Gene Therapy.Curr Gene Ther2022
32893403DNSS2: Improved ab initio protein secondary structure prediction using advanced deep learning architectures.Proteins2021
33542514Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge.Nat Methods2021
33961009Improving deep learning-based protein distance prediction in CASP14.Bioinformatics2021
34162922MULTICOM2 open-source protein structure prediction system powered by deep learning and distance prediction.Sci Rep2021
33677584Genomic imbalance determines positive and negative modulation of gene expression in diploid maize.Plant Cell2021
33522898DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks.BMC Bioinformatics2021
34035363Protein model accuracy estimation empowered by deep learning and inter-residue distance prediction in CASP14.Sci Rep2021
33656551Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize.Plant Cell2021
34088847Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution.Proc Natl Acad Sci U S A2021
34187363Correction to: DeepDist: realâ¿¿value interâ¿¿residue distance prediction with deep residual convolutional network.BMC Bioinformatics2021
33494711DeepDist: real-value inter-residue distance prediction with deep residual convolutional network.BMC Bioinformatics2021
33270838GNET2: an R package for constructing gene regulatory networks from transcriptomic data.Bioinformatics2021
32893403DNSS2: Improved ab initio protein secondary structure prediction using advanced deep learning architectures.Proteins2021
33407077DISTEVAL: a web server for evaluating predicted protein distances.BMC Bioinformatics2021
33656551Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize.Plant Cell2021
33522898DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks.BMC Bioinformatics2021
33494711DeepDist: real-value inter-residue distance prediction with deep residual convolutional network.BMC Bioinformatics2021
33542514Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge.Nat Methods2021
33677584Genomic imbalance determines positive and negative modulation of gene expression in diploid maize.Plant Cell2021
34187363Correction to: DeepDist: realâ¿¿value interâ¿¿residue distance prediction with deep residual convolutional network.BMC Bioinformatics2021
33961009Improving deep learning-based protein distance prediction in CASP14.Bioinformatics2021
34035363Protein model accuracy estimation empowered by deep learning and inter-residue distance prediction in CASP14.Sci Rep2021
34088847Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution.Proc Natl Acad Sci U S A2021
34162922MULTICOM2 open-source protein structure prediction system powered by deep learning and distance prediction.Sci Rep2021
33407077DISTEVAL: a web server for evaluating predicted protein distances.BMC Bioinformatics2021
33270838GNET2: an R package for constructing gene regulatory networks from transcriptomic data.Bioinformatics2021
31504181Analysis of several key factors influencing deep learning-based inter-residue contact prediction.Bioinformatics2020
32326049Bioinformatics Methods for Mass Spectrometry-Based Proteomics Data Analysis.Int J Mol Sci2020
32178980Magnitude of modulation of gene expression in aneuploid maize depends on the extent of genomic imbalance.J Genet Genomics2020
32152330Deep Learning to Predict Protein Backbone Structure from High-Resolution Cryo-EM Density Maps.Sci Rep2020
32088896The Gene Balance Hypothesis: Epigenetics and Dosage Effects in Plants.Methods Mol Biol2020
31860156SAXSDom: Modeling multidomain protein structures using small-angle X-ray scattering data.Proteins2020
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Collaborators

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Jilong Li
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Co-authored papers 3
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Co-authored papers 3
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Chaok Seok
Seoul National University
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VIB-VUB Center for Structural Biology
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Imperial College London
Co-authored papers 1
Marco Mesiti
Universita degli Studi di Milano
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Tyler Borrman
University of Massachusetts Medical School
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Neven Sumonja
Institute of Nuclear Sciences VINCA, University of Belgrade
Co-authored papers 1
Magdalena Kotlicka-Antczak
Medical University of Lodz
Co-authored papers 1
Alan J Medlar
Co-authored papers 1
Rui Fa
University College London
Co-authored papers 1
Torsten Schwede
University of Basel
Co-authored papers 1
Zhiping Weng
University of Massachusetts Medical School
Co-authored papers 1
Release 1.2