Author details

Full Name

Jeremy Buhler

Affiliation

Washington University in St. Louis

ORCID

Career Start Year

1997

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37430479	First Report of <i>Berkeleyomyces basicola</i> Causing Black Shoot Rot of Raspberry in Nursery Production in the United States and Worldwide.	Plant Dis	2023
36061313	Student Attitudes Contribute to the Effectiveness of a Genomics CURE.	J Microbiol Biol Educ	2022
28667019	Retrotransposons Are the Major Contributors to the Expansion of the <i>Drosophila ananassae</i> Muller F Element.	G3 (Bethesda)	2017
25740935	Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution.	G3 (Bethesda)	2015
24591510	A course-based research experience: how benefits change with increased investment in instructional time.	CBE Life Sci Educ	2014
25452493	A central support system can facilitate implementation and sustainability of a Classroom-based Undergraduate Research Experience (CURE) in Genomics.	CBE Life Sci Educ	2014
22084145	Designing filters for fast-known NcRNA identification.	IEEE/ACM Trans Comput Biol Bioinform	2012
22492645	PhyLAT: a phylogenetic local alignment tool.	Bioinformatics	2012
22300316	Fast, sensitive discovery of conserved genome-wide motifs.	J Comput Biol	2012
20194808	The genomics education partnership: successful integration of research into laboratory classes at a diverse group of undergraduate institutions.	CBE Life Sci Educ	2010
20479145	Evolution of a distinct genomic domain in Drosophila: comparative analysis of the dot chromosome in Drosophila melanogaster and Drosophila virilis.	Genetics	2010
19407348	Designing patterns and profiles for faster HMM search.	IEEE/ACM Trans Comput Biol Bioinform	2009
20160873	Acceleration of Ungapped Extension in Mercury BLAST.	Microprocess Microsyst	2009
18974335	Undergraduate research. Genomics Education Partnership.	Science	2008
19642276	Designing secondary structure profiles for fast ncRNA identification.	Comput Syst Bioinformatics Conf	2008
19492068	Mercury BLASTP: Accelerating Protein Sequence Alignment.	ACM Trans Reconfigurable Technol Syst	2008
17237102	Designing patterns for profile HMM search.	Bioinformatics	2007
18846267	Biosequence Similarity Search on the Mercury System.	J VLSI Signal Process Syst Signal Image Video Technol	2007
17951799	An iterative method for selecting degenerate multiplex PCR primers.	Methods Mol Biol	2007
16533404	Choosing the best heuristic for seeded alignment of DNA sequences.	BMC Bioinformatics	2006
16507169	Comparison of dot chromosome sequences from D. melanogaster and D. virilis reveals an enrichment of DNA transposon sequences in heterochromatic domains.	Genome Biol	2006
15790854	Glycan foraging in vivo by an intestine-adapted bacterial symbiont.	Science	2005
16108721	Designing multiple simultaneous seeds for DNA similarity search.	J Comput Biol	2005
15539453	Operon prediction without a training set.	Bioinformatics	2005
14992488	Design of a high-throughput assay for alternative splicing using polymerase colonies.	Pac Symp Biocomput	2004
12855448	Detecting protein sequence conservation via metric embeddings.	Bioinformatics	2003
15338610	The effects of evolutionary distance on TWINSCAN, an algorithm for pair-wise comparative gene prediction.	Cold Spring Harb Symp Quant Biol	2003
13677335	Provably sensitive indexing strategies for biosequence similarity search.	J Comput Biol	2003
12015879	Finding motifs using random projections.	J Comput Biol	2002
11331236	Efficient large-scale sequence comparison by locality-sensitive hashing.	Bioinformatics	2001
11340206	Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.	Science	2001
10434260	[Muscle strength and gait patterns of depressed people].	Nervenarzt	1999
9239508	Linkage analyses in type I diabetes mellitus using CASPAR, a software and statistical program for conditional analysis of polygenic diseases.	Hum Hered	1997

1 - 33 of 33

Carl Kingsford

Carnegie Mellon University

Career Start Year 2005

Number of shared co-authors 0

Suleyman Cenk Sahinalp

National Cancer Institute, National Institutes of Health

Career Start Year 2001

Number of shared co-authors 2

Martin C Frith

Artificial Intelligence Research Center, University of Tokyo

Career Start Year 2001

Number of shared co-authors 0

Haixu Tang

Indiana University

Career Start Year 2000

Number of shared co-authors 0

Ian Korf

University of California davis

Career Start Year 1998

Number of shared co-authors 2

Vineet Bafna

University of California San Diego

Career Start Year 1998

Number of shared co-authors 3

Knut Reinert

Institut fur Informatik, Freie Universitat Berlin

Career Start Year 1998

Number of shared co-authors 1

Louxin Zhang

National University of Singapore

Career Start Year 1996

Number of shared co-authors 0

Burkhard Morgenstern

Institute of Microbiology and Genetics

Career Start Year 1996

Number of shared co-authors 0

Stefano Lonardi

University of California Riverside

Career Start Year 1996

Number of shared co-authors 0

Richa Agarwala

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1995

Number of shared co-authors 3

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 2

Aaron L Halpern

Illumina Inc.

Career Start Year 1995

Number of shared co-authors 3

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 0

Bonnie Berger

Massachusetts Institute of Technology

Career Start Year 1994

Number of shared co-authors 0

Steven E Brenner

University of California berkeley

Career Start Year 1994

Number of shared co-authors 0

Inna Dubchak

Lawrence Berkeley National Laboratory

Career Start Year 1993

Number of shared co-authors 1

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 2

Tao Jiang

University of California riverside

Career Start Year 1992

Number of shared co-authors 1

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Career Start Year 1992

Number of shared co-authors 2

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 0

Zhiping Weng

University of Massachusetts Medical School

Career Start Year 1992

Number of shared co-authors 2

Ewan Birney

European Bioinformatics Institute

Career Start Year 1992

Number of shared co-authors 3

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 3

Jaap Heringa

VU University Amsterdam

Career Start Year 1991

Number of shared co-authors 0

Pavel A Pevzner

University of California

Career Start Year 1987

Number of shared co-authors 2

David Haussler

Genomics Institute, University of California Santa Cruz

Career Start Year 1986

Number of shared co-authors 7

Michael S Waterman

Biocomplexity Institute and Initiative

Career Start Year 1977

Number of shared co-authors 0

William R Pearson

University of Virginia

Career Start Year 1974

Number of shared co-authors 0

Richard Durbin

University of Cambridge

Career Start Year 1964

Number of shared co-authors 4

row(s) 1 - 30 of 30

Sarah C R Elgin

Co-authored papers 9

Elaine R Mardis

The Ohio State University

Co-authored papers 8

Gerard P McNeil

Co-authored papers 7

Chris Tyler-Smith

Wellcome Sanger Institute

Co-authored papers 5

Justin L Sonnenburg

Stanford University

Co-authored papers 2

Gary D Stormo

Washington University in St. Louis

Co-authored papers 2

Patrick Ng

Co-authored papers 2

Matthew Williams

Co-authored papers 1

Ruedi Aebersold

Institute of Molecular Systems Biology, ETH Zurich

Co-authored papers 1

Priya Srikanth

Oregon Health & Science University (OHSU)

Co-authored papers 1

Craig B Wilen

Yale School of Medicine

Co-authored papers 1

Dac-Trung Nguyen

Co-authored papers 1

Valerie Gonzalez

Co-authored papers 1

Tao He

Co-authored papers 1

Tingting Gu

Co-authored papers 1

Michelle S Itano

Co-authored papers 1

Jeffrey A Ranish

Institute for Systems Biology

Co-authored papers 1

Vesteinn Thorsson

Institute for Systems Biology

Co-authored papers 1

Michael R Brent

Co-authored papers 1

Jimmy K Eng

University of Washington

Co-authored papers 1

Robert N Hoover

National Cancer Institute

Co-authored papers 1

Tina Wong

Co-authored papers 1

Rowan H Christmas

Co-authored papers 1

Roger E Bumgarner

University of Washington

Co-authored papers 1

Norie De La Cruz

California State University

Co-authored papers 1

Miguel Vazquez

Norwegian University of Science and Technology

Co-authored papers 1

Leroy Hood

Center for Phenomic Health, The Buck Institute for Research on Aging

Co-authored papers 1

David R Goodlett

University of Victoria

Co-authored papers 1

Yi Ren

Co-authored papers 1

Sam Ng

University of Adelaide

Co-authored papers 1

1 - 30

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