|
| 36630290 | The first gapless, reference-quality, fully annotated genome from a Southern Han Chinese individual. | G3 (Bethesda) | 2023 |
| 38014212 | A Genome Sequence for the Threatened Whitebark Pine. | bioRxiv | 2023 |
| 37364298 | Impacts of Sex Ratio Meiotic Drive on Genome Structure and Function in a Stalk-Eyed Fly. | Genome Biol Evol | 2023 |
| 37000853 | JASPER: A fast genome polishing tool that improves accuracy of genome assemblies. | PLoS Comput Biol | 2023 |
| 34897437 | A reference-quality, fully annotated genome from a Puerto Rican individual. | Genetics | 2022 |
| 37602140 | Metagenomic classification with KrakenUniq on low-memory computers. | J Open Source Softw | 2022 |
| 35440538 | High-quality genome and methylomes illustrate features underlying evolutionary success of oaks. | Nat Commun | 2022 |
| 36762707 | Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus. | Gigascience | 2022 |
| 35867761 | The evolution of synaptic and cognitive capacity: Insights from the nervous system transcriptome of <i>Aplysia</i>. | Proc Natl Acad Sci U S A | 2022 |
| 35100403 | Assembled and annotated 26.5 Gbp coast redwood genome: a resource for estimating evolutionary adaptive potential and investigating hexaploid origin. | G3 (Bethesda) | 2022 |
| 35120119 | The SAMBA tool uses long reads to improve the contiguity of genome assemblies. | PLoS Comput Biol | 2022 |
| 34162536 | The American lobster genome reveals insights on longevity, neural, and immune adaptations. | Sci Adv | 2021 |
| 33909645 | A pseudomolecule assembly of the Rocky Mountain elk genome. | PLoS One | 2021 |
| 33780561 | De novo assembly and annotation of the North American bison (Bison bison) reference genome and subsequent variant identification. | Anim Genet | 2021 |
| 32191811 | De novo assembly of the cattle reference genome with single-molecule sequencing. | Gigascience | 2020 |
| 31986137 | Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing. | PLoS Genet | 2020 |
| 33274050 | The genome of the American groundhog, <i>Marmota monax</i>. | F1000Res | 2020 |
| 32796007 | Chromosome-Scale Assembly of the Bread Wheat Genome Reveals Thousands of Additional Gene Copies. | Genetics | 2020 |
| 32589667 | The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies. | PLoS Comput Biol | 2020 |
| 32948606 | A Reference Genome Sequence for Giant Sequoia. | G3 (Bethesda) | 2020 |
| 32109587 | Soybean aphid biotype 1 genome: Insights into the invasive biology and adaptive evolution of a major agricultural pest. | Insect Biochem Mol Biol | 2020 |
| 32432329 | High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome. | Gigascience | 2020 |
| 32487205 | Assembly and annotation of an Ashkenazi human reference genome. | Genome Biol | 2020 |
| 30698692 | New de novo assembly of the Atlantic bottlenose dolphin (Tursiops truncatus) improves genome completeness and provides haplotype phasing. | Gigascience | 2019 |
| 31842956 | Transcriptome assembly from long-read RNA-seq alignments with StringTie2. | Genome Biol | 2019 |
| 31064768 | Human contamination in bacterial genomes has created thousands of spurious proteins. | Genome Res | 2019 |
| 29373581 | MUMmer4: A fast and versatile genome alignment system. | PLoS Comput Biol | 2018 |
| 27852011 | A New Chicken Genome Assembly Provides Insight into Avian Genome Structure. | G3 (Bethesda) | 2017 |
| 28130360 | Hybrid assembly of the large and highly repetitive genome of <i>Aegilops tauschii</i>, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm. | Genome Res | 2017 |
| 28369353 | An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing. | Gigascience | 2017 |
| 28963165 | First Draft Genome Sequence of the Pathogenic Fungus <i>Lomentospora prolificans</i> (Formerly <i>Scedosporium prolificans</i>). | G3 (Bethesda) | 2017 |
| 29048578 | Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50). | Gigascience | 2017 |
| 29143815 | Genome sequence of the progenitor of the wheat D genome Aegilops tauschii. | Nature | 2017 |
| 29069494 | The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum. | Gigascience | 2017 |
| 29020755 | Erratum to: An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing. | Gigascience | 2017 |
| 28751502 | The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae. | G3 (Bethesda) | 2017 |
| 27088604 | The Atlantic salmon genome provides insights into rediploidization. | Nature | 2016 |
| 28185554 | Evolution of transcriptional networks in yeast: alternative teams of transcriptional factors for different species. | BMC Genomics | 2016 |
| 27794028 | Sequence of the Sugar Pine Megagenome. | Genetics | 2016 |
| 27708261 | Genome sequence of the basal haplorrhine primate Tarsius syrichta reveals unusual insertions. | Nat Commun | 2016 |
| 27172201 | A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination. | G3 (Bethesda) | 2016 |
| 27249958 | The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts. | Nat Commun | 2016 |
| 26083032 | QuorUM: An Error Corrector for Illumina Reads. | PLoS One | 2015 |
| 24647006 | Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies. | Genome Biol | 2014 |
| 25510865 | Transposable element islands facilitate adaptation to novel environments in an invasive species. | Nat Commun | 2014 |
| 25319552 | A new rhesus macaque assembly and annotation for next-generation sequencing analyses. | Biol Direct | 2014 |
| 24570472 | Next-generation sequencing strategies for characterizing the turkey genome. | Poult Sci | 2014 |
| 24653211 | Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation. | Genetics | 2014 |
| 24653210 | Sequencing and assembly of the 22-gb loblolly pine genome. | Genetics | 2014 |
| 23990416 | The MaSuRCA genome assembler. | Bioinformatics | 2013 |