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Author Details

Yan Xu
Los Alamos National Laboratory
2013
30
10
PMIDPaper TitleJournal TitlePublished Year
37142360A centralized resource for bacterial-fungal interactions research.Fungal Biol2023
36303775Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.Front Bioinform2022
35561186EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts.Bioinformatics2022
32777813A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays.Bioinformatics2021
27899609Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform.Nucleic Acids Res2017
34595290Brief Protocol for EDGE Bioinformatics: Analyzing Microbial and Metagenomic NGS Data.Bio Protoc2017
28473393High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: <i>Gordonia</i> sp., <i>Paenibacillus</i> sp., <i>Variovorax</i> sp., and <i>Vogesella</i> sp.Genome Announc2017
28775794High-quality genome sequence of the radioresistant bacterium <i>Deinococcus ficus</i> KS 0460.Stand Genomic Sci2017
27103731Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor.Genome Announc2016
25931589Genome sequencing of 18 francisella strains to aid in assay development and testing.Genome Announc2015
25931592Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor.Genome Announc2015
25931590Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica.Genome Announc2015
25342681Draft Genome Assemblies of Proteus mirabilis ATCC 7002 and Proteus vulgaris ATCC 49132.Genome Announc2014
25780500Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain NZP2037.Stand Genomic Sci2014
25291776Complete Genome Assembly of Escherichia coli ATCC 25922, a Serotype O6 Reference Strain.Genome Announc2014
25291775Complete Genome Assembly of Enterococcus faecalis 29212, a Laboratory Reference Strain.Genome Announc2014
25291772Complete Genome Assembly of Reference Strain Ochrobactrum anthropi ATCC 49687.Genome Announc2014
25291770Draft Genome Assembly of Neisseria lactamica Type Strain A7515.Genome Announc2014
25237024Whole-genome sequences of 24 Brucella strains.Genome Announc2014
25258274Complete Genome Assembly of Streptococcus pyogenes ATCC 19615, a Group A β-Hemolytic Reference Strain.Genome Announc2014
25278526Draft Genome Assembly of Pseudomonas aeruginosa Quality Control Reference Strain Boston 41501.Genome Announc2014
25342692Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Enteritidis Strain SEJ.Genome Announc2014
25342690Full-Genome Assembly of Reference Strain Providencia stuartii ATCC 33672.Genome Announc2014
25342683Draft Genome Assemblies of Enterobacter aerogenes CDC 6003-71, Enterobacter cloacae CDC 442-68, and Pantoea agglomerans UA 0804-01.Genome Announc2014
23814105Draft Genome Sequence of Methylomicrobium buryatense Strain 5G, a Haloalkaline-Tolerant Methanotrophic Bacterium.Genome Announc2013
24265494Draft Genome Sequence and Description of Janthinobacterium sp. Strain CG3, a Psychrotolerant Antarctic Supraglacial Stream Bacterium.Genome Announc2013
24501625Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements.Stand Genomic Sci2013
24501629Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4.Stand Genomic Sci2013
24976880Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943.Stand Genomic Sci2013
24976892Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production.Stand Genomic Sci2013
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Collaborators

Patrick S G Chain
Los Alamos National Laboratory
Co-authored papers 30
Karen W Davenport
Los Alamos National Laboratory
Co-authored papers 29
Chien-Chi Lo
Los Alamos National Laboratory
Co-authored papers 9
Po-E Li
Los Alamos National Laboratory
Co-authored papers 7
Nikos C Kyrpides
Co-authored papers 6
Tanja Woyke
Co-authored papers 6
Amrita Pati
Department of Energy (DOE) Joint Genome Institute
Co-authored papers 4
Marcel Huntemann
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 4
Cliff Han
Los Alamos National Laboratory
Co-authored papers 3
Bin Hu
Los Alamos National Laboratory
Co-authored papers 3
Migun Shakya
Los Alamos National Laboratory
Co-authored papers 3
Hans-Peter Klenk
Co-authored papers 3
Konstantinos Mavromatis
Celgene Corporation
Co-authored papers 3
Neha Varghese
Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
Shweta Deshpande
Cleveland Clinic Akron General Medical Center
Co-authored papers 2
Kristen M DeAngelis
University of Massachusetts
Co-authored papers 1
Lee Ann McCue
Pacific Northwest National Laboratory
Co-authored papers 1
Donald Winston
Polyneme LLC
Co-authored papers 1
Kjiersten Fagnan
Lawrence Berkeley National Laboratory
Co-authored papers 1
Samuel O Purvine
Pacific Northwest National Laboratory
Co-authored papers 1
Mark Flynn
Los Alamos National Laboratory
Co-authored papers 1
Anubhav
Pacific Northwest National Laboratory
Co-authored papers 1
Michal Babinski
Los Alamos National Laboratory
Co-authored papers 1
David Hays
Lawrence Berkeley National Laboratory
Co-authored papers 1
Nicole Shapiro
Co-authored papers 1
Tbk Reddy
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 1
Paul D Piehowski
Pacific Northwest National Laboratory
Co-authored papers 1
Montana Smith
Pacific Northwest National Laboratory
Co-authored papers 1
Julia Kelliher
Los Alamos National Laboratory
Co-authored papers 1
Christopher J Mungall
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 1
Release 1.2