Author details

Full Name

Dmitri Beglov

Affiliation

Boston University

ORCID

Career Start Year

1997

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36088633	Mapping of antibody epitopes based on docking and homology modeling.	Proteins	2023
36088633	Mapping of antibody epitopes based on docking and homology modeling.	Proteins	2023
37905971	Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.	Proteins	2023
36961978	High Accuracy Prediction of PROTAC Complex Structures.	J Am Chem Soc	2023
37188806	The ClusPro AbEMap web server for the prediction of antibody epitopes.	Nat Protoc	2023
37905971	Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.	Proteins	2023
37188806	The ClusPro AbEMap web server for the prediction of antibody epitopes.	Nat Protoc	2023
36961978	High Accuracy Prediction of PROTAC Complex Structures.	J Am Chem Soc	2023
32142178	ClusPro in rounds 38 to 45 of CAPRI: Toward combining template-based methods with free docking.	Proteins	2020
32142178	ClusPro in rounds 38 to 45 of CAPRI: Toward combining template-based methods with free docking.	Proteins	2020
31810712	Structure-Based Analysis of Cryptic-Site Opening.	Structure	2020
33291870	Benchmark Sets for Binding Hot Spot Identification in Fragment-Based Ligand Discovery.	J Chem Inf Model	2020
31810712	Structure-Based Analysis of Cryptic-Site Opening.	Structure	2020
33291870	Benchmark Sets for Binding Hot Spot Identification in Fragment-Based Ligand Discovery.	J Chem Inf Model	2020
30653918	Discovery of Macrocyclic Inhibitors of Apurinic/Apyrimidinic Endonuclease 1.	J Med Chem	2019
31612567	Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.	Proteins	2019
30653918	Discovery of Macrocyclic Inhibitors of Apurinic/Apyrimidinic Endonuclease 1.	J Med Chem	2019
31519508	Amidino-Rocaglates: A Potent Class of eIF4A Inhibitors.	Cell Chem Biol	2019
31444975	Template-based modeling by ClusPro in CASP13 and the potential for using co-evolutionary information in docking.	Proteins	2019
31612567	Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.	Proteins	2019
31519508	Amidino-Rocaglates: A Potent Class of eIF4A Inhibitors.	Cell Chem Biol	2019
31444975	Template-based modeling by ClusPro in CASP13 and the potential for using co-evolutionary information in docking.	Proteins	2019
29101520	Protein-ligand docking using FFT based sampling: D3R case study.	J Comput Aided Mol Des	2018
29581267	Exploring the structural origins of cryptic sites on proteins.	Proc Natl Acad Sci U S A	2018
29800865	Cryptic binding sites on proteins: definition, detection, and druggability.	Curr Opin Chem Biol	2018
29101520	Protein-ligand docking using FFT based sampling: D3R case study.	J Comput Aided Mol Des	2018
29800865	Cryptic binding sites on proteins: definition, detection, and druggability.	Curr Opin Chem Biol	2018
29581267	Exploring the structural origins of cryptic sites on proteins.	Proc Natl Acad Sci U S A	2018
27936493	New additions to the ClusPro server motivated by CAPRI.	Proteins	2017
28430871	ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT.	Bioinformatics	2017
27936493	New additions to the ClusPro server motivated by CAPRI.	Proteins	2017
28079879	The ClusPro web server for protein-protein docking.	Nat Protoc	2017
28079879	The ClusPro web server for protein-protein docking.	Nat Protoc	2017
28430871	ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT.	Bioinformatics	2017
26891978	Quantifying the chameleonic properties of macrocycles and other high-molecular-weight drugs.	Drug Discov Today	2016
26891978	Quantifying the chameleonic properties of macrocycles and other high-molecular-weight drugs.	Drug Discov Today	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
25855957	The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins.	Nat Protoc	2015
25855957	The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins.	Nat Protoc	2015
26478722	Energy Minimization on Manifolds for Docking Flexible Molecules.	J Chem Theory Comput	2015
26478722	Energy Minimization on Manifolds for Docking Flexible Molecules.	J Chem Theory Comput	2015
24413562	Organization of the human mitochondrial transcription initiation complex.	Nucleic Acids Res	2014
25328494	Efficient Maintenance and Update of Nonbonded Lists in Macromolecular Simulations.	J Chem Theory Comput	2014
24413562	Organization of the human mitochondrial transcription initiation complex.	Nucleic Acids Res	2014
25038790	How proteins bind macrocycles.	Nat Chem Biol	2014
24714491	Encounter complexes and dimensionality reduction in protein-protein association.	Elife	2014
25159092	In silico identification of an aryl hydrocarbon receptor antagonist with biological activity in vitro and in vivo.	Mol Pharmacol	2014
24974889	Docking server for the identification of heparin binding sites on proteins.	J Chem Inf Model	2014
24513115	Stimulators of translation identified during a small molecule screening campaign.	Anal Biochem	2014

1 - 50 of 104

Guillaume Launay

CNRS UMR 5086 and Universite Claude Bernard Lyon 1

Career Start Year 2007

Number of shared co-authors 3

Nir London

The Weizmann Institute of Science

Career Start Year 2007

Number of shared co-authors 27

Barak Raveh

The Hebrew University of Jerusalem

Career Start Year 2007

Number of shared co-authors 8

Jaume Bonet

Institute of Bioengineering, Ecole Polytechnique Federale de Lausanne

Career Start Year 2006

Number of shared co-authors 9

Jacob D Durrant

University of Pittsburgh

Career Start Year 2006

Number of shared co-authors 0

Rommie E Amaro

University of California

Career Start Year 2001

Number of shared co-authors 4

Hao Fan

College of Biotechnology and Bioengineering, Zhejiang University of Technology

Career Start Year 2001

Number of shared co-authors 2

Matthew P Jacobson

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 1999

Number of shared co-authors 10

Heather A Carlson

University of Michigan ann arbor

Career Start Year 1999

Number of shared co-authors 1

Peter W Rose

University of California

Career Start Year 1999

Number of shared co-authors 6

Nikolay V Dokholyan

Pennsylvania State University College of Medicine

Career Start Year 1998

Number of shared co-authors 6

Roberto Sanchez

Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai

Career Start Year 1996

Number of shared co-authors 5

Mallur S Madhusudhan

Indian Institute of Science Education and Research Pune

Career Start Year 1996

Number of shared co-authors 2

Giorgio Colombo

Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico

Career Start Year 1993

Number of shared co-authors 0

Haim J Wolfson

Tel Aviv University

Career Start Year 1991

Number of shared co-authors 40

Carlos J Camacho

University of Pittsburgh

Career Start Year 1990

Number of shared co-authors 25

Ram Samudrala

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1990

Number of shared co-authors 2

Brian K Shoichet

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 1989

Number of shared co-authors 5

Herman W T van Vlijmen

Leiden Academic Centre for Drug Research (LACDR), Leiden University

Career Start Year 1988

Number of shared co-authors 1

Gerhard Klebe

Institut fur Pharmazeutische Chemie, Philipps-Universitat Marburg

Career Start Year 1988

Number of shared co-authors 2

Diane Joseph-McCarthy

Boston University

Career Start Year 1987

Number of shared co-authors 2

Piotr Cieplak

Sanford-Burnham-Prebys Medical Discovery Institute

Career Start Year 1987

Number of shared co-authors 0

Michael K Gilson

University of California

Career Start Year 1985

Number of shared co-authors 2

Ruben Abagyan

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 1981

Number of shared co-authors 3

Ruth Nussinov

Sackler School of Medicine, Tel Aviv University

Career Start Year 1980

Number of shared co-authors 11

Charles L Brooks

University of Michigan ann arbor

Career Start Year 1974

Number of shared co-authors 1

Tom L Blundell

Heartand Lung Research Institute, University of Cambridge

Career Start Year 1971

Number of shared co-authors 4

Michael Levitt

Stanford University

Career Start Year 1969

Number of shared co-authors 14

Andras Fiser

Albert Einstein College of Medicine

Career Start Year 1968

Number of shared co-authors 8

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 10

row(s) 1 - 30 of 30

Sandor Vajda

Boston University

Co-authored papers 47

Dima Kozakov

Stony Brook University

Co-authored papers 46

David R Hall

Diamond Light Source Ltd, Harwell Science & Innovation Campus

Co-authored papers 19

Tanggis Bohnuud

Amgen Inc.

Co-authored papers 9

Scott E Mottarella

Boston University

Co-authored papers 8

Bing Xia

Xijing Hospital, The Fourth Military Medical University

Co-authored papers 6

Gwo-Yu Chuang

Co-authored papers 6

Dzmitry Padhorny

Co-authored papers 6

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Co-authored papers 4

Yang Shen

The Second Affiliated Hospital of Nanchang University

Co-authored papers 4

Juan Fern??ndez-Recio

Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)

Co-authored papers 4

Alexandre M J J Bonvin

Bijvoet Center for Biomolecular Research, Utrecht University

Co-authored papers 4

Sameer Velankar

European Bioinformatics Institute

Co-authored papers 4

Mikhail Ignatov

Co-authored papers 4

Xiaoqin Zou

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 4

Brian Jim??nez-Garc??a

Utrecht University

Co-authored papers 4

Ora Schueler-Furman

Co-authored papers 4

Zhiping Weng

University of Massachusetts Medical School

Co-authored papers 3

Xianjin Xu

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 3

Luigi Cavallo

King Abdullah University of Science and Technology (KAUST)

Co-authored papers 3

Daron M Standley

Osaka university

Co-authored papers 3

Marc F Lensink

University Lille, CNRS

Co-authored papers 3

Genki Terashi

Co-authored papers 3

Chaok Seok

Seoul National University

Co-authored papers 3

Miguel Romero-Durana

Pontificia Universidad Javeriana

Co-authored papers 3

Sheng-You Huang

Huazhong University of Science and Technology

Co-authored papers 3

Daisuke Kihara

Purdue University

Co-authored papers 3

Brian G Pierce

University of Maryland Institute for Bioscience and Biotechnology Research

Co-authored papers 3

Thom Vreven

Visterra Inc.

Co-authored papers 3

Iain H Moal

GSK Medicines Research Centre

Co-authored papers 3

1 - 30

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