Author details

Full Name

Zhiao Shi

Affiliation

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37993103	IDPpub: Illuminating the Dark Phosphoproteome Through PubMed Mining.	Mol Cell Proteomics	2024
37619559	A proteogenomics data-driven knowledge base of human cancer.	Cell Syst	2023
36001024	Proteogenomic Markers of Chemotherapy Resistance and Response in Triple-Negative Breast Cancer.	Cancer Discov	2022
33417831	Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.	Cancer Cell	2021
33887487	Feature Selection Methods for Protein Biomarker Discovery from Proteomics or Multiomics Data.	Mol Cell Proteomics	2021
34036290	A community effort to identify and correct mislabeled samples in proteogenomic studies.	Patterns (N Y)	2021
32939979	Deep Learning in Proteomics.	Proteomics	2020
32007940	Correction: Graph Algorithms for Condensing and Consolidating Gene Set Analysis Results.	Mol Cell Proteomics	2020
31114916	WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs.	Nucleic Acids Res	2019
31142576	Graph Algorithms for Condensing and Consolidating Gene Set Analysis Results.	Mol Cell Proteomics	2019
28472511	WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit.	Nucleic Acids Res	2017
28625833	Colorectal Cancer Cell Line Proteomes Are Representative of Primary Tumors and Predict Drug Sensitivity.	Gastroenterology	2017
25527095	Empowering biologists with multi-omics data: colorectal cancer as a paradigm.	Bioinformatics	2015
25043054	Proteogenomic characterization of human colon and rectal cancer.	Nature	2014
25320007	Nuclear factor of activated T-cell activity is associated with metastatic capacity in colon cancer.	Cancer Res	2014
23703215	WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013.	Nucleic Acids Res	2013
24260186	Deciphering genomic alterations in colorectal cancer through transcriptional subtype-based network analysis.	PLoS One	2013
23807191	NetGestalt: integrating multidimensional omics data over biological networks.	Nat Methods	2013
23282288	GLAD4U: deriving and prioritizing gene lists from PubMed literature.	BMC Genomics	2012
21594272	Relating protein adduction to gene expression changes: a systems approach.	Mol Biosyst	2011
21569426	Fast network centrality analysis using GPUs.	BMC Bioinformatics	2011
20507583	Co-expression module analysis reveals biological processes, genomic gain, and regulatory mechanisms associated with breast cancer progression.	BMC Syst Biol	2010
11566403	Mathematical model development and simulation of in situ stabilization in lead-contaminated soils.	Journal of Hazardous Materials	2001