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Author Details

Fabio C Gozzo
Institute of Chemistry, University of Campinas
1995
148
33
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36804625DiagnoMass: A proteomics hub for pinpointing discriminative spectral clusters.J Proteomics2023
36947430PatternLab V Handles Multiplex Spectra in Shotgun Proteomic Searches and Increases Identification.J Am Soc Mass Spectrom2023
36443572Mechanism of high-mannose N-glycan breakdown and metabolism by Bifidobacterium longum.Nat Chem Biol2023
35155563Molecular Architecture of the Antiophidic Protein DM64 and its Binding Specificity to Myotoxin II From <i>Bothrops asper</i> Venom.Front Mol Biosci2022
35411045Simple, efficient and thorough shotgun proteomic analysis with PatternLab V.Nat Protoc2022
36130273Increasing confidence in proteomic spectral deconvolution through mass defect.Bioinformatics2022
33446650Two distinct catalytic pathways for GH43 xylanolytic enzymes unveiled by X-ray and QM/MM simulations.Nat Commun2021
33681984Characterizing protein conformers by cross-linking mass spectrometry and pattern recognition.Bioinformatics2021
34959456New Intracellular Peptide Derived from Hemoglobin Alpha Chain Induces Glucose Uptake and Reduces Blood Glycemia.Pharmaceutics2021
34086840Structural discrimination analysis for constraint selection in protein modeling.Bioinformatics2021
34193873Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors.Nat Commun2021
32451508Structural insights into β-1,3-glucan cleavage by a glycoside hydrolase family.Nat Chem Biol2020
31698103Unveiling the interaction between the molecular motor Myosin Vc and the small GTPase Rab3A.J Proteomics2020
32079362The Relevance of Thimet Oligopeptidase in the Regulation of Energy Metabolism and Diet-Induced Obesity.Biomolecules2020
31693206Structural complementarity of distance constraints obtained from chemical cross-linking and amino acid coevolution.Proteins2020
33065067Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.Structure2020
32587363Publisher Correction: Structural insights into β-1,3-glucan cleavage by a glycoside hydrolase family.Nat Chem Biol2020
32526479RawVegetable - A data assessment tool for proteomics and cross-linking mass spectrometry experiments.J Proteomics2020
32387712Mixed-Data Acquisition: Next-Generation Quantitative Proteomics Data Acquisition.J Proteomics2020
32434038The role of the quaternary structure in the activation of human L-asparaginase.J Proteomics2020
29425735Revealing the interaction mode of the highly flexible Sorghum bicolor Hsp70/Hsp90 organizing protein (Hop): A conserved carboxylate clamp confers high affinity binding to Hsp90.J Proteomics2019
31314152C7orf59/LAMTOR4 phosphorylation and structural flexibility modulate Ragulator assembly.FEBS Open Bio2019
31045356First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.Anal Chem2019
31011990Understanding mechanisms of oocyte development by follicular fluid lipidomics.J Assist Reprod Genet2019
30629147TopoLink: evaluation of structural models using chemical crosslinking distance constraints.Bioinformatics2019
30629125Statistical force-field for structural modeling using chemical cross-linking/mass spectrometry distance constraints.Bioinformatics2019
30641082N-glycan Utilization by Bifidobacterium Gut Symbionts Involves a Specialist β-Mannosidase.J Mol Biol2019
29581061Evaluation of some effects on plant metabolism through proteins and enzymes in transgenic and non-transgenic soybeans after cultivation with silver nanoparticles.J Proteomics2019
29565564XPlex: An Effective, Multiplex Cross-Linking Chemistry for Acidic Residues.Anal Chem2018
30160956Combined Role of the Asymmetric Counteranion-Directed Catalysis (ACDC) and Ionic Liquid Effect for the Enantioselective Biginelli Multicomponent Reaction.J Org Chem2018
29997257Structural basis of exo-β-mannanase activity in the GH2 family.J Biol Chem2018
30127853The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans.Biotechnol Biofuels2018
30014448Ovarian environment aging: follicular fluid lipidomic and related metabolic pathways.J Assist Reprod Genet2018
30225491Is the formation of N-heterocyclic carbenes (NHCs) a feasible mechanism for the distillation of imidazolium ionic liquids?Phys Chem Chem Phys2018
29447388Enhancing protein fold determination by exploring the complementary information of chemical cross-linking and coevolutionary signals.Bioinformatics2018
29388937Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins.Nat Protoc2018
29550241Low Bioavailability and High Immunogenicity of a New Brand of E. colil-Asparaginase with Active Host Contaminating Proteins.EBioMedicine2018
29547280Heteropolyacid-Containing Ionic Liquid-Catalyzed Multicomponent Synthesis of Bridgehead Nitrogen Heterocycles: Mechanisms and Mitochondrial Staining.J Org Chem2018
27523479Interferon-gamma activity is potentiated by an intracellular peptide derived from the human 19S ATPase regulatory subunit 4 of the proteasome.J Proteomics2017
28130891DIA is not a new mass spectrometry acquisition method.Proteomics2017
28781084Crystal Structure and Regulation of the Citrus Pol III Repressor MAF1 by Auxin and Phosphorylation.Structure2017
28693412Proteomics-based identification of differentially abundant proteins reveals adaptation mechanisms of Xanthomonas citri subsp. citri during Citrus sinensis infection.BMC Microbiol2017
28662995Simplifying the human serum proteome for discriminating patients with bipolar disorder of other psychiatry conditions.Clin Biochem2017
26056922[des-Arg(1)]-Proctolin: A novel NEP-like enzyme inhibitor identified in Tityus serrulatus venom.Peptides2016
27356560Elucidating Protein Involvement in the Stabilization of the Biogenic Silver Nanoparticles.Nanoscale Res Lett2016
27489114Crystal structure of the human Tip41 orthologue, TIPRL, reveals a novel fold and a binding site for the PP2Ac C-terminus.Sci Rep2016
27402847Heat Shock Protein 90 kDa (Hsp90) Has a Second Functional Interaction Site with the Mitochondrial Import Receptor Tom70.J Biol Chem2016
26994287The SEB-1 Transcription Factor Binds to the STRE Motif in Neurospora crassa and Regulates a Variety of Cellular Processes Including the Stress Response and Reserve Carbohydrate Metabolism.G3 (Bethesda)2016
26956392Fullerene separation and identification by traveling wave ion mobility mass spectrometry in laser desorption processes during asphaltene analysis.J Mass Spectrom2016
27054066Scaffold proteins LACK and TRACK as potential drug targets in kinetoplastid parasites: Development of inhibitors.Int J Parasitol Drugs Drug Resist2016
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Collaborators

Julia Chamot-Rooke
Institut Pasteur, Universite Paris Cite, CNRS UAR4
Co-authored papers 3
Christoph H Borchers
McGill University
Co-authored papers 2
Rosa Viner
University of California (Davis)
Co-authored papers 2
Daniela M Tomazela
Co-authored papers 2
Frank Sobott
University of Antwerp, University of Leeds
Co-authored papers 2
Meng-Qiu Dong
National Institute of Biological Sciences
Co-authored papers 2
J??rgen Cox
Max-Planck Institute of Biochemistry
Co-authored papers 2
William S Davidson
University of Cincinnati College of Medicine
Co-authored papers 2
Jos?? C??sar Rosa
University of Sao Paulo
Co-authored papers 2
Evgeniy V Petrotchenko
Lady Davis Institute for Medical Research, Jewish General Hospital, McGill University
Co-authored papers 2
Rodrigo V Honorato
Co-authored papers 2
David C Schriemer
University of Calgary, 0 Hospital Drive NW
Co-authored papers 2
Lan Huang
University of California Irvine
Co-authored papers 2
Florian Stengel
University of Konstanz Universitatsstrasse 10
Co-authored papers 2
Michael R Hoopmann
Institute for Systems Biology
Co-authored papers 2
José Eduardo Krieger
Co-authored papers 2
Richard A Scheltema
Utrecht Institute for Pharmaceutical Sciences, Utrecht University
Co-authored papers 2
Nir Kalisman
Institute of Life Sciences, The Hebrew University
Co-authored papers 2
Petr Nov??k
Institute of Microbiology of the CAS
Co-authored papers 2
Juri Rappsilber
Institute for Biotechnology, Technical University Berlin
Co-authored papers 2
Andrea Sinz
Center for Structural Mass Spectrometry, Martin Luther University Halle-Wittenberg
Co-authored papers 2
Robert L Moritz
Institute for Systems Biology
Co-authored papers 2
Carla Schmidt
Johannes Gutenberg University Mainz
Co-authored papers 2
Alexander Leitner
ETH Zurich
Co-authored papers 2
Michael G??tze
and Pharmacy, Freie Universitat Berlin
Co-authored papers 2
Albert J R Heck
Utrecht University
Co-authored papers 2
Karl Mechtler
IMP-Institute of Molecular Pathology
Co-authored papers 2
Gilberto B Domont
Institute of Chemistry, Federal University of Rio de Janeiro
Co-authored papers 2
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 1
Michael J MacCoss
University of Washington
Co-authored papers 1
Release 1.2