Skip to Main Content

Author Details

Amina A Qutub
University of Texas at San Antonio
2004
45
18
PMIDPaper TitleJournal TitlePublished Year
34727208Differential proteome profile, biological pathways, and network relationships of osteogenic proteins in calcified human aortic valves.Heart Vessels2022
35696439cytoNet: Spatiotemporal network analysis of cell communities.PLoS Comput Biol2022
35021602Clinical relevance of proteomic profiling in <i>de novo</i> pediatric acute myeloid leukemia: a Children's Oncology Group study.Haematologica2022
34422660Decoupling Lineage-Associated Genes in Acute Myeloid Leukemia Reveals Inflammatory and Metabolic Signatures Associated With Outcomes.Front Oncol2021
33686208Integrins and extracellular matrix proteins modulate adipocyte thermogenic capacity.Sci Rep2021
30650251Proteomic Profiling of Acute Promyelocytic Leukemia Identifies Two Protein Signatures Associated with Relapse.Proteomics Clin Appl2019
31467303Image-based Classification of Tumor Type and Growth Rate using Machine Learning: a preclinical study.Sci Rep2019
31519692A novel self-organizing embryonic stem cell system reveals signaling logic underlying the patterning of human ectoderm.Development2019
31105032LGALS3 is connected to CD74 in a previously unknown protein network that is associated with poor survival in patients with AML.EBioMedicine2019
29505696Histone Modification Patterns Using RPPA-Based Profiling Predict Outcome in Acute Myeloid Leukemia Patients.Proteomics2018
30191439Mycoplasma contamination of leukemic cell lines alters protein expression determined by reverse phase protein arrays.Cytotechnology2018
29898608Shining a light on cell signaling in leukemia through proteomics: relevance for the clinic.Expert Rev Proteomics2018
29361928Shrinkage Clustering: a fast and size-constrained clustering algorithm for biomedical applications.BMC Bioinformatics2018
29615917Advances in Glioblastoma Multiforme Treatment: New Models for Nanoparticle Therapy.Front Physiol2018
29669823Recurrent Patterns of Protein Expression Signatures in Pediatric Acute Lymphoblastic Leukemia: Recognition and Therapeutic Guidance.Mol Cancer Res2018
29669821Recognition of Recurrent Protein Expression Patterns in Pediatric Acute Myeloid Leukemia Identified New Therapeutic Targets.Mol Cancer Res2018
27885271p53 pathway dysfunction is highly prevalent in acute myeloid leukemia independent of TP53 mutational status.Leukemia2017
28336360GAIN: A graphical method to automatically analyze individual neurite outgrowth.J Neurosci Methods2017
27897000IDENTIFYING CANCER SPECIFIC METABOLIC SIGNATURES USING CONSTRAINT-BASED MODELS.Pac Symp Biocomput2017
26901648Inferring causal molecular networks: empirical assessment through a community-based effort.Nat Methods2016
28035236Evolution-informed modeling improves outcome prediction for cancers.Evol Appl2016
27351836A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis.PLoS Comput Biol2016
26942765Reconstruction of Tissue-Specific Metabolic Networks Using CORDA.PLoS Comput Biol2016
26905425Endothelial cells decode VEGF-mediated Ca2+ signaling patterns to produce distinct functional responses.Sci Signal2016
25988713Recapitulation and Modulation of the Cellular Architecture of a User-Chosen Cell of Interest Using Cell-Derived, Biomimetic Patterning.ACS Nano2015
26267476Progeny Clustering: A Method to Identify Biological Phenotypes.Sci Rep2015
25890056Predicting internal cell fluxes at sub-optimal growth.BMC Syst Biol2015
25884993Simulation predicts IGFBP2-HIF1α interaction drives glioblastoma growth.PLoS Comput Biol2015
23266714Cells as state machines: cell behavior patterns arise during capillary formation as a function of BDNF and VEGF.J Theor Biol2013
24130532Systems approaches for synthetic biology: a pathway toward mammalian design.Front Physiol2013
24223100Proteomic profiling identifies distinct protein patterns in acute myelogenous leukemia CD34+CD38- stem-like cells.PLoS One2013
21266494Computational models of VEGF-associated angiogenic processes in cancer.Math Med Biol2012
22893271Multiplexed in situ immunofluorescence using dynamic DNA complexes.Angew Chem Int Ed Engl2012
22623292Network analysis of reverse phase protein expression data: characterizing protein signatures in acute myeloid leukemia cytogenetic categories t(8;21) and inv(16).Proteomics2012
21463529Module-based multiscale simulation of angiogenesis in skeletal muscle.Theor Biol Med Model2011
21917756Abnormal expression of FLI1 protein is an adverse prognostic factor in acute myeloid leukemia.Blood2011
20890966Systems biology of pro-angiogenic therapies targeting the VEGF system.Wiley Interdiscip Rev Syst Biol Med2010
19209711Integration of angiogenesis modules at multiple scales: from molecular to tissue.Pac Symp Biocomput2009
19349248Multiscale models of angiogenesis.IEEE Eng Med Biol Mag2009
19171061Elongation, proliferation &amp; migration differentiate endothelial cell phenotypes and determine capillary sprouting.BMC Syst Biol2009
18559422Reactive oxygen species regulate hypoxia-inducible factor 1alpha differentially in cancer and ischemia.Mol Cell Biol2008
17720260Three autocrine feedback loops determine HIF1 alpha expression in chronic hypoxia.Biochim Biophys Acta2007
16899821A computational model of intracellular oxygen sensing by hypoxia-inducible factor HIF1 alpha.J Cell Sci2006
16269321Glucose transport to the brain: a systems model.Brain Res Brain Res Rev2005
17271809Modeling transport kinetics with StarLogo.Conf Proc IEEE Eng Med Biol Soc2004
  • 1 - 45 of 45

Recommended Authors

Aurelien Dugourd
Institute of Experimental Medicine and Systems Biology, RWTH Aachen University
Career Start Year 2016
Number of shared co-authors 1
Genevieve L Stein-O'Brien
Johns Hopkins School of Medicine
Career Start Year 2014
Number of shared co-authors 5
David L Gibbs
Institute for Systems Biology
Career Start Year 2013
Number of shared co-authors 4
James A Eddy
Benaroya Research Institute at Virginia Mason, Institute for Systems Biology, Sage Bionetworks, University of Illinois at Urbana-Champaign
Career Start Year 2008
Number of shared co-authors 2
Neda Bagheri
University of Washington
Career Start Year 2007
Number of shared co-authors 0
Marc R Birtwistle
Clemson University.
Career Start Year 2007
Number of shared co-authors 5
James C Costello
University of Colorado Anschutz Medical Campus
Career Start Year 2006
Number of shared co-authors 8
Armand Bankhead
Rogel Cancer Center, University of Michigan ann arbor
Career Start Year 2005
Number of shared co-authors 1
Shannon K Alford
National Cancer Institute
Career Start Year 2004
Number of shared co-authors 1
Andrei Zinovyev
INSERM U, Institut Curie, PSL Research University
Career Start Year 2003
Number of shared co-authors 0
Mar??a Rodr??guez Mart??nez
Herbert Irving Cancer Research Center, Columbia University Medical Center
Career Start Year 2002
Number of shared co-authors 3
Nathan D Price
Institute for Systems Biology
Career Start Year 2002
Number of shared co-authors 2
Steven J Altschuler
Department of Pharmaceutical Chemistry, University of California san francisco
Career Start Year 2001
Number of shared co-authors 0
Lani F Wu
Department of Pharmaceutical Chemistry, University of California san francisco
Career Start Year 2001
Number of shared co-authors 0
Jean Yee Hwa Yang
The University of Sydney
Career Start Year 2001
Number of shared co-authors 2
Ilya Shmulevich
Institute for Systems Biology
Career Start Year 2001
Number of shared co-authors 9
Kevin A Janes
University of Virginia
Career Start Year 2001
Number of shared co-authors 0
Dana Pe'er
Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center
Career Start Year 2000
Number of shared co-authors 1
Tero Aittokallio
Institute for Molecular Medicine Finland (FIMM), University of Helsinki
Career Start Year 1999
Number of shared co-authors 14
Kerby Shedden
University of Michigan ann arbor
Career Start Year 1999
Number of shared co-authors 0
Igor Jurisica
Schroeder Arthritis Institute
Career Start Year 1998
Number of shared co-authors 3
Roland Eils
Berlin Institute of Health (BIH) and Charite
Career Start Year 1995
Number of shared co-authors 3
Jesper Tegn??r
King Abdullah University of Science and Technology (KAUST)
Career Start Year 1993
Number of shared co-authors 1
Fabian J Theis
Technical University of Munich
Career Start Year 1992
Number of shared co-authors 1
Zolt??n N Oltvai
University of Rochester
Career Start Year 1991
Number of shared co-authors 0
Shankar Subramaniam
University of California
Career Start Year 1989
Number of shared co-authors 0
Pablo Tamayo
University of California San Diego
Career Start Year 1988
Number of shared co-authors 5
Yuval Kluger
Yale University School of Medicine
Career Start Year 1984
Number of shared co-authors 1
Douglas A Lauffenburger
Massachusetts Institute of Technology
Career Start Year 1979
Number of shared co-authors 1
Eytan Ruppin
National Cancer Institute
Career Start Year 1971
Number of shared co-authors 0

Collaborators

Steven M Kornblau
The University of Texas MD Anderson Cancer Center
Co-authored papers 17
Wendy Hu
The University of Texas MD Anderson Cancer Center
Co-authored papers 14
Byron L Long
Rice University
Co-authored papers 8
Kevin R Coombes
Medical College of Georgia
Co-authored papers 5
David P Noren
Rice University
Co-authored papers 4
Andre Schultz
The University of Western Australia
Co-authored papers 4
Nianxiang Zhang
Co-authored papers 3
Stephen H Friend
University of Oxford
Co-authored papers 2
Alex J Bisberg
Rice University
Co-authored papers 2
Cindy A Hunt
University of California san francisco
Co-authored papers 2
Thea Norman
Bill & Melinda Gates Foundation
Co-authored papers 2
Gustavo Stolovitzky
IBM T.J. Watson Research Center
Co-authored papers 2
Ken Chen
University of Texas MD Anderson Cancer Center
Co-authored papers 1
Michael E Scheurer
Co-authored papers 1
Jieping Ye
University of Michigan ann arbor
Co-authored papers 1
Jennifer Soto
Mayo Clinic
Co-authored papers 1
Ludmila Danilova
Bloomberg-Kimmel Immunotherapy Institute, Johns Hopkins University School of Medicine
Co-authored papers 1
Alexander V Favorov
Johns Hopkins School of Medicine
Co-authored papers 1
Michael R Kellen
University of Washington
Co-authored papers 1
Erik Engquist
Rice University
Co-authored papers 1
Yuanfang Guan
University of Michigan ann arbor
Co-authored papers 1
Soheil Meshinchi
Fred Hutchinson Cancer Research Centre
Co-authored papers 1
Jorge Cortes
Georgia Cancer Center
Co-authored papers 1
Anne M Dickinson
Translational and Clinical Research Institute, Newcastle University
Co-authored papers 1
Linghua Wang
The University of Texas M. D. Anderson
Co-authored papers 1
Paul C Boutros
University of California los angeles
Co-authored papers 1
Farhad Ravandi
University of Texas M.D. Anderson Cancer Center
Co-authored papers 1
Adrian Bivol
University of California
Co-authored papers 1
Joshua M Stuart
University of California at Santa Cruz
Co-authored papers 1
Li Liu
College of Big Data & Software Engineering, Chongqing University
Co-authored papers 1
Release 1.2