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Author Details

Thomas J Deerinck
National Center for Microscopy and Imaging Research, University of California
1982
137
63
Christopher Churas (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37916792Astrocyte ensheathment of calyx-forming axons of the auditory brainstem precedes accelerated expression of myelin genes and myelination by oligodendrocytes.J Comp Neurol2024
37066274Do perineuronal nets stabilize the engram of a synaptic circuit?bioRxiv2023
37662336Caloric restriction promotes beta cell longevity and delays aging and senescence by enhancing cell identity and homeostasis mechanisms.bioRxiv2023
37662194Fe-TAMLs as a new class of small molecule peroxidase probes for correlated light and electron microscopy.bioRxiv2023
37790446Caloric restriction promotes beta cell longevity and delays aging and senescence by enhancing cell identity and homeostasis mechanisms.Res Sq2023
36321837A Cristae-Like Microcompartment in <i>Desulfobacterota</i>.mBio2022
34843601A combined EM and proteomic analysis places HIV-1 Vpu at the crossroads of retromer and ESCRT complexes: PTPN23 is a Vpu-cofactor.PLoS Pathog2021
33591270Proximity proteomics in a marine diatom reveals a putative cell surface-to-chloroplast iron trafficking pathway.Elife2021
33784496Genetic requirements for cell division in a genomically minimal cell.Cell2021
34671772SARS-CoV-2 spike protein induces abnormal inflammatory blood clots neutralized by fibrin immunotherapy.bioRxiv2021
30552100Visualization of long-lived proteins reveals age mosaicism within nuclei of postmitotic cells.J Cell Biol2019
31178361Age Mosaicism across Multiple Scales in Adult Tissues.Cell Metab2019
31511521Author Correction: Structural basis for delta cell paracrine regulation in pancreatic islets.Nat Commun2019
31420552Structural basis for delta cell paracrine regulation in pancreatic islets.Nat Commun2019
31618632Synaptic Specializations of Melanopsin-Retinal Ganglion Cells in Multiple Brain Regions Revealed by Genetic Label for Light and Electron Microscopy.Cell Rep2019
29194648High-performance serial block-face SEM of nonconductive biological samples enabled by focal gas injection-based charge compensation.J Microsc2018
30171236CDeep3M-Plug-and-Play cloud-based deep learning for image segmentation.Nat Methods2018
30333092Nano-structural analysis of engrafted human induced pluripotent stem cell-derived cardiomyocytes in mouse hearts using a genetic-probe APEX2.Biochem Biophys Res Commun2018
29765060Iron-specific Signal Separation from within Heavy Metal Stained Biological Samples Using X-Ray Microtomography with Polychromatic Source and Energy-Integrating Detectors.Sci Rep2018
29625978Subgroup Characteristics of Marine Methane-Oxidizing ANME-2 Archaea and Their Syntrophic Partners as Revealed by Integrated Multimodal Analytical Microscopy.Appl Environ Microbiol2018
27859324High resolution three-dimensional reconstruction of fibrotic skeletal muscle extracellular matrix.J Physiol2017
28301477Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability.PLoS Comput Biol2017
28274703Spines of the porcupine fish: Structure, composition, and mechanical properties.J Mech Behav Biomed Mater2017
28238724Proximity Biotinylation as a Method for Mapping Proteins Associated with mtDNA in Living Cells.Cell Chem Biol2017
28751582ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells.Science2017
28796234Electron microscopy using the genetically encoded APEX2 tag in cultured mammalian cells.Nat Protoc2017
28630145Activity-dependent trafficking of lysosomes in dendrites and dendritic spines.J Cell Biol2017
27695667Deceleration of probe beam by stage bias potential improves resolution of serial block-face scanning electron microscopic images.Adv Struct Chem Imaging2017
27110681Click-EM for imaging metabolically tagged nonprotein biomolecules.Nat Chem Biol2016
27565350Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts.Cell2016
27240195A split horseradish peroxidase for the detection of intercellular protein-protein interactions and sensitive visualization of synapses.Nat Biotechnol2016
27221672Corrigendum to 'Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy' [Methods 90 (2015) 39-48].Methods2016
27013737Design and synthesis of a minimal bacterial genome.Science2016
27029936Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants.BMC Genomics2016
25419960Directed evolution of APEX2 for electron microscopy and proximity labeling.Nat Methods2015
26066760Visualizing viral protein structures in cells using genetic probes for correlated light and electron microscopy.Methods2015
25874453Correlative stochastic optical reconstruction microscopy and electron microscopy.PLoS One2015
25897682Designer diatom episomes delivered by bacterial conjugation.Nat Commun2015
25313043Computational design of a red fluorophore ligase for site-specific protein labeling in living cells.Proc Natl Acad Sci U S A2014
25426032A workflow for the automatic segmentation of organelles in electron microscopy image stacks.Front Neuroanat2014
25275291Three-dimensional reconstruction of skeletal muscle extracellular matrix ultrastructure.Microsc Microanal2014
23339176Construction of a polarized neuron.J Physiol2013
23827674Catastrophic nuclear envelope collapse in cancer cell micronuclei.Cell2013
24013648Molecular composition and ultrastructure of the caveolar coat complex.PLoS Biol2013
23926251Synaptic inputs compete during rapid formation of the calyx of Held: a new model system for neural development.J Neurosci2013
23407494Abundant SAR11 viruses in the ocean.Nature2013
23563314Loss of acinar cell IKKα triggers spontaneous pancreatitis in mice.J Clin Invest2013
22857927Picking faces out of a crowd: genetic labels for identification of proteins in correlated light and electron microscopy imaging.Methods Cell Biol2012
23187627Fibrinogen-induced perivascular microglial clustering is required for the development of axonal damage in neuroinflammation.Nat Commun2012
23063122A structural basis for the assembly and functions of a viral polymer that inactivates multiple tumor suppressors.Cell2012
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Collaborators

Mark H Ellisman
National Center for Microscopy and Imaging Research, University of California
Co-authored papers 125
Eric A Bushong
University of California San Diego (university of california san diego)
Co-authored papers 17
Maryann E Martone
university of california san diego
Co-authored papers 14
Roger Y Tsien
University of California
Co-authored papers 11
Sebastien Phan
University of California San Diego
Co-authored papers 9
Alice Y Ting
Stanford University
Co-authored papers 7
Steven T Peltier
University of California
Co-authored papers 7
James C Bouwer
Co-authored papers 6
Michael Karin
Co-authored papers 5
Susan S Taylor
University of California
Co-authored papers 4
Xiaokun Shu
Co-authored papers 4
Daniela Boassa
University of California San Diego
Co-authored papers 4
Alex Perez
National Center for Microscopy and Imaging Research, University of California
Co-authored papers 3
Albert Lawrence
National Center for Microscopy and Imaging Research, University of California
Co-authored papers 3
Tony L Yaksh
University of California
Co-authored papers 3
Huaiyu Mi
University of Southern California
Co-authored papers 3
Masako Terada
Co-authored papers 3
Vamsi K Mootha
Broad Institute of MIT and Harvard
Co-authored papers 2
Satchidananda Panda
The Salk Institute for Biological Studies
Co-authored papers 2
Richard L Lieber
Co-authored papers 2
Hamilton O Smith
J. Craig Venter Institute
Co-authored papers 2
John Guatelli
University of California San Diego, USA VA San Diego Healthcare System
Co-authored papers 2
J C Venter
The J. Craig Venter Institute
Co-authored papers 2
Yinling Hu
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 2
Jae K Ryu
Gladstone Institutes
Co-authored papers 2
Katerina Akassoglou
Gladstone Institute for Neurological Disease San Francisco
Co-authored papers 2
Lily Jun-Shen Huang
University of Texas Southwestern Medical Center
Co-authored papers 2
Matthias G Haberl
National Center for Microscopy and Imaging Research, University of California
Co-authored papers 2
Bridget Carragher
Columbia University
Co-authored papers 2
Steven A Carr
Broad Institute of MIT and Harvard
Co-authored papers 2
Release 1.2