Skip to Main Content

Author Details

Wout Bittremieux
University of Antwerp
2014
51
17
PMIDPaper TitleJournal TitlePublished Year
37870574Benchmarking of Small Molecule Feature Representations for hERG, Nav1.5, and Cav1.2 Cardiotoxicity Prediction.J Chem Inf Model2024
38009585Machine learning-based peptide-spectrum match rescoring opens up the immunopeptidome.Proteomics2024
37870574Benchmarking of Small Molecule Feature Representations for hERG, Nav1.5, and Cav1.2 Cardiotoxicity Prediction.J Chem Inf Model2024
38009585Machine learning-based peptide-spectrum match rescoring opens up the immunopeptidome.Proteomics2024
36688502Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils.J Proteome Res2023
37853256Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation.Nat Biotechnol2023
37369033Accelerating open modification spectral library searching on tensor core in high-dimensional space.Bioinformatics2023
37166120HyperSpec: Ultrafast Mass Spectra Clustering in Hyperdimensional Space.J Proteome Res2023
36688569Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching.J Proteome Res2023
36688502Unified and Standardized Mass Spectrometry Data Processing in Python Using spectrum_utils.J Proteome Res2023
36626722Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.J Proteome Res2023
37853256Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation.Nat Biotechnol2023
37369033Accelerating open modification spectral library searching on tensor core in high-dimensional space.Bioinformatics2023
37166120HyperSpec: Ultrafast Mass Spectra Clustering in Hyperdimensional Space.J Proteome Res2023
36626722Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.J Proteome Res2023
36688569Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching.J Proteome Res2023
34793633Physicochemical properties determining drug detection in skin.Clin Transl Sci2022
35960544Comparison of Cosine, Modified Cosine, and Neutral Loss Based Spectrum Alignment For Discovery of Structurally Related Molecules.J Am Soc Mass Spectrom2022
35941113Native metabolomics identifies the rivulariapeptolide family of protease inhibitors.Nat Commun2022
35798960Enhancing untargeted metabolomics using metadata-based source annotation.Nat Biotechnol2022
35549218A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics.J Proteome Res2022
35290070Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.J Proteome Res2022
34793633Physicochemical properties determining drug detection in skin.Clin Transl Sci2022
36409434The critical role that spectral libraries play in capturing the metabolomics community knowledge.Metabolomics2022
36241021Open Modification Searching of SARS-CoV-2-Human Protein Interaction Data Reveals Novel Viral Modification Sites.Mol Cell Proteomics2022
36149920Four layer multi-omics reveals molecular responses to aneuploidy in Leishmania.PLoS Pathog2022
35549218A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics.J Proteome Res2022
35798960Enhancing untargeted metabolomics using metadata-based source annotation.Nat Biotechnol2022
36409434The critical role that spectral libraries play in capturing the metabolomics community knowledge.Metabolomics2022
36149920Four layer multi-omics reveals molecular responses to aneuploidy in Leishmania.PLoS Pathog2022
35941113Native metabolomics identifies the rivulariapeptolide family of protease inhibitors.Nat Commun2022
36241021Open Modification Searching of SARS-CoV-2-Human Protein Interaction Data Reveals Novel Viral Modification Sites.Mol Cell Proteomics2022
35960544Comparison of Cosine, Modified Cosine, and Neutral Loss Based Spectrum Alignment For Discovery of Structurally Related Molecules.J Am Soc Mass Spectrom2022
35290070Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.J Proteome Res2022
33169034Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data.Nat Biotechnol2021
33605735Open Science Resources for the Mass Spectrometry-Based Analysis of SARS-CoV-2.J Proteome Res2021
33346826Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification.Brief Bioinform2021
33169034Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data.Nat Biotechnol2021
34342226ppx: Programmatic Access to Proteomics Data Repositories.J Proteome Res2021
34183830Universal Spectrum Identifier for mass spectra.Nat Methods2021
34169593Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.Rapid Commun Mass Spectrom2021
33955607Current and future deep learning algorithms for tandem mass spectrometry (MS/MS)-based small molecule structure elucidation.Rapid Commun Mass Spectrom2021
33843054Sharing biological data: why, when, and how.FEBS Lett2021
33843054Sharing biological data: why, when, and how.FEBS Lett2021
33605735Open Science Resources for the Mass Spectrometry-Based Analysis of SARS-CoV-2.J Proteome Res2021
34183830Universal Spectrum Identifier for mass spectra.Nat Methods2021
34342226ppx: Programmatic Access to Proteomics Data Repositories.J Proteome Res2021
33955607Current and future deep learning algorithms for tandem mass spectrometry (MS/MS)-based small molecule structure elucidation.Rapid Commun Mass Spectrom2021
34169593Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.Rapid Commun Mass Spectrom2021
33346826Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification.Brief Bioinform2021
  • 1 - 50 of 102

Recommended Authors

Robert J Millikin
Morgridge Institute for Research
Career Start Year 2018
Number of shared co-authors 5
Felipe da Veiga Leprevost
University of Michigan ann arbor
Career Start Year 2013
Number of shared co-authors 10
Jesse G Meyer
Buck Institute for Research on Aging, Cedars-Sinai Medical Center
Career Start Year 2012
Number of shared co-authors 1
Wenguang Shao
Institute of Molecular Systems Biology, ETH Zurich
Career Start Year 2011
Number of shared co-authors 4
Alicia L Richards
University of Wisconsin-Madison
Career Start Year 2011
Number of shared co-authors 1
Michael R Hoopmann
Institute for Systems Biology
Career Start Year 2007
Number of shared co-authors 15
Craig D Wenger
University of Wisconsin
Career Start Year 2007
Number of shared co-authors 2
J??rgen Cox
Max-Planck Institute of Biochemistry
Career Start Year 2006
Number of shared co-authors 16
Samuel H Payne
Brigham Young University
Career Start Year 2006
Number of shared co-authors 15
Ching-Tai Chen
Asia University
Career Start Year 2006
Number of shared co-authors 2
Arnaud Droit
Centre de Recherche du CHU de Quebec-Universite, Universite Laval
Career Start Year 2005
Number of shared co-authors 1
Matthew E Monroe
Pacific Northwest National Laboratory
Career Start Year 2004
Number of shared co-authors 3
Patrick G A Pedrioli
Institute of Translational Medicine, Swiss Federal Institute of Technology/ETH Zurich
Career Start Year 2004
Number of shared co-authors 5
Ting-Yi Sung
School of Pharmacy, College of Medicine, National Taiwan University
Career Start Year 2003
Number of shared co-authors 6
Yassene Mohammed
Center for Proteomics and Metabolomics, Leiden University Medical Center
Career Start Year 2003
Number of shared co-authors 7
Bobbie-Jo M Webb-Robertson
Pacific Northwest National Laboratory
Career Start Year 2002
Number of shared co-authors 3
Olga Vitek
Khoury College of Computer Sciences, Northeastern University
Career Start Year 2000
Number of shared co-authors 6
Hanno Steen
Boston Children's Hospital, USA Harvard Medical School, Harvard Medical School
Career Start Year 2000
Number of shared co-authors 0
Parag Mallick
Stanford University
Career Start Year 2000
Number of shared co-authors 9
Robert J Chalkley
Department of Pharmaceutical Chemistry, University of California at San Francisco
Career Start Year 1999
Number of shared co-authors 16
Wenqing Shui
iHuman Institute, ShanghaiTech University
Career Start Year 1998
Number of shared co-authors 0
Michael R Shortreed
University of Wisconsin-Madison
Career Start Year 1996
Number of shared co-authors 7
Michael J MacCoss
University of Washington
Career Start Year 1995
Number of shared co-authors 15
Alexey I Nesvizhskii
University of Michigan ann arbor
Career Start Year 1994
Number of shared co-authors 14
Jimmy K Eng
University of Washington
Career Start Year 1994
Number of shared co-authors 6
David Feny??
Institute for Systems Genetics, NYU Grossman School of Medicine
Career Start Year 1989
Number of shared co-authors 9
David R Goodlett
University of Victoria
Career Start Year 1988
Number of shared co-authors 4
David S Wishart
University of Alberta
Career Start Year 1986
Number of shared co-authors 6
Timothy J Griffin
University of Minnesota
Career Start Year 1985
Number of shared co-authors 4
Joshua E Elias
Addenbrooke's Hospital, University of Cambridge
Career Start Year 1985
Number of shared co-authors 4

Collaborators

Pieter C Dorrestein
Co-authored papers 10
Lennart Martens
Co-authored papers 9
Mingxun Wang
Co-authored papers 7
Juan Antonio Vizca??no
EMBL-European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 5
Eric W Deutsch
Institute for Systems Biology
Co-authored papers 5
Yasset Perez-Riverol
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 5
Pierre-Alain Binz
Co-authored papers 4
David L Tabb
Co-authored papers 4
William Stafford Noble
Co-authored papers 4
Nuno Bandeira
University of California
Co-authored papers 4
Alan K Jarmusch
Co-authored papers 3
Veit Schw??mmle
University of Southern Denmark
Co-authored papers 3
Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Gail Ackermann
University of California San Diego
Co-authored papers 2
Timo Sachsenberg
Institute for Bioinformatics and Medical Informatics, University of Tubingen
Co-authored papers 2
Robin Schmid
Co-authored papers 2
Sandra Orchard
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Parambir S Dulai
Feinberg School of Medicine Northwestern University
Co-authored papers 2
Brigid S Boland
University of California
Co-authored papers 2
Justin P Shaffer
University of California San Diego
Co-authored papers 2
Oliver Kohlbacher
Max Planck Institute for Developmental Biology
Co-authored papers 2
Florian Huber
Co-authored papers 2
Pedro Belda-Ferre
University of California San Diego
Co-authored papers 2
Daniel McDonald
University of California San Diego
Co-authored papers 2
Niema Moshiri
Bonita Vista High School, University of California San Diego, University of California, San Diego
Co-authored papers 2
Austin D Swafford
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 2
Clarisse Marotz
University of California San Diego
Co-authored papers 2
Lev I Levitsky
Co-authored papers 2
Tatyana I Kalashnikova
The Scripps Research Institute
Co-authored papers 2
Albert J R Heck
Utrecht University
Co-authored papers 2
Release 1.2