|
| 37971715 | Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. | Database (Oxford) | 2023 |
| 34850822 | Addressing noise in co-expression network construction. | Brief Bioinform | 2022 |
| 35501696 | GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure. | BMC Bioinformatics | 2022 |
| 35524179 | Identification of condition-specific regulatory mechanisms in normal and cancerous human lung tissue. | BMC Genomics | 2022 |
| 34044788 | Chromosomal characteristics of salt stress heritable gene expression in the rice genome. | BMC Genom Data | 2021 |
| 33748749 | Named Data Networking for Genomics Data Management and Integrated Workflows. | Front Big Data | 2021 |
| 34251419 | Tripal, a community update after 10Â years of supporting open source, standards-based genetic, genomic and breeding databases. | Brief Bioinform | 2021 |
| 34220875 | Transcriptomics of Differential Ripening in 'd'Anjou' Pear (<i>Pyrus communis</i> L.). | Front Plant Sci | 2021 |
| 32244875 | Dissecting the Genetic Architecture of Aphanomyces Root Rot Resistance in Lentil by QTL Mapping and Genome-Wide Association Study. | Int J Mol Sci | 2020 |
| 31960040 | Tripal EUtils: a Tripal module to increase exchange and reuse of genome assembly metadata. | Database (Oxford) | 2020 |
| 33195534 | A Fixed Cohort Field Study of Gene Expression in Circulating Leukocytes From Dairy Cows With and Without Mastitis. | Front Vet Sci | 2020 |
| 32621602 | Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases. | Database (Oxford) | 2020 |
| 30357347 | 15 years of GDR: New data and functionality in the Genome Database for Rosaceae. | Nucleic Acids Res | 2019 |
| 31688940 | Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps. | Database (Oxford) | 2019 |
| 31328773 | Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases. | Database (Oxford) | 2019 |
| 31293610 | Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment. | Front Plant Sci | 2019 |
| 30865259 | Growing and cultivating the forest genomics database, TreeGenes. | Database (Oxford) | 2019 |
| 31020553 | Structural and Functional Annotation of Eukaryotic Genomes with GenSAS. | Methods Mol Biol | 2019 |
| 29541392 | Discovery and validation of a glioblastoma co-expressed gene module. | Oncotarget | 2018 |
| 30239679 | AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. | Database (Oxford) | 2018 |
| 30239664 | Growing and cultivating the forest genomics database, TreeGenes. | Database (Oxford) | 2018 |
| 30462743 | High-density multi-population consensus genetic linkage map for peach. | PLoS One | 2018 |
| 28819158 | Discovering Condition-Specific Gene Co-Expression Patterns Using Gaussian Mixture Models: A Cancer Case Study. | Sci Rep | 2017 |
| 31725859 | Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases. | Database (Oxford) | 2017 |
| 28077564 | blend4php: a PHP API for galaxy. | Database (Oxford) | 2017 |
| 29220446 | New extension software modules to enhance searching and display of transcriptome data in Tripal databases. | Database (Oxford) | 2017 |
| 26989146 | Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. | Database (Oxford) | 2016 |
| 27195960 | Large-Scale Gene Relocations following an Ancient Genome Triplication Associated with the Diversification of Core Eudicots. | PLoS One | 2016 |
| 27141090 | Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. | Database (Oxford) | 2016 |
| 25886969 | Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria ÿ ananassa. | BMC Genomics | 2015 |
| 24225320 | The Genome Database for Rosaceae (GDR): year 10 update. | Nucleic Acids Res | 2014 |
| 24203703 | CottonGen: a genomics, genetics and breeding database for cotton research. | Nucleic Acids Res | 2014 |
| 23525075 | The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. | Nat Genet | 2013 |
| 24163125 | Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases. | Database (Oxford) | 2013 |
| 23874666 | A systems-genetics approach and data mining tool to assist in the discovery of genes underlying complex traits in Oryza sativa. | PLoS One | 2013 |
| 23738693 | Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study. | BMC Syst Biol | 2013 |
| 23409071 | Massive-scale gene co-expression network construction and robustness testing using random matrix theory. | PLoS One | 2013 |
| 22429310 | Chestnut resistance to the blight disease: insights from transcriptome analysis. | BMC Plant Biol | 2012 |
| 23284615 | Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. | PLoS One | 2012 |
| 23024789 | Conserved non-coding regulatory signatures in Arabidopsis co-expressed gene modules. | PLoS One | 2012 |
| 21606319 | Gene coexpression network alignment and conservation of gene modules between two grass species: maize and rice. | Plant Physiol | 2011 |
| 22164235 | Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms. | PLoS One | 2011 |
| 21794110 | Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes. | BMC Genomics | 2011 |
| 21846342 | A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6. | BMC Genomics | 2011 |
| 21959868 | Tripal: a construction toolkit for online genome databases. | Database (Oxford) | 2011 |
| 20668062 | The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks. | Plant Physiol | 2010 |
| 16737546 | CMD: a Cotton Microsatellite Database resource for Gossypium genomics. | BMC Genomics | 2006 |
| 15357877 | GDR (Genome Database for Rosaceae): integrated web resources for Rosaceae genomics and genetics research. | BMC Bioinformatics | 2004 |