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Author Details

Gholamreza Bidkhori
KTH - Royal Institute of Technology, Sweden AIVIVO Ltd. Unit 25
2012
31
18
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
38081506Tuning of CHO secretional machinery improve activity of secreted therapeutic sulfatase 150-fold.Metab Eng2024
36681701Metabolic modelling of the human gut microbiome in type 2 diabetes patients in response to metformin treatment.NPJ Syst Biol Appl2023
36844450Systematic diet composition swap in a mouse genome-scale metabolic model reveals determinants of obesogenic diet metabolism in liver cancer.iScience2023
35754734Genome-scale metabolic modelling of the human gut microbiome reveals changes in the glyoxylate and dicarboxylate metabolism in metabolic disorders.iScience2022
33554059Acute kidney injury leading to CKD is associated with a persistence of metabolic dysfunction and hypertriglyceridemia.iScience2021
33657381Systematic analysis of gut microbiome reveals the role of bacterial folate and homocysteine metabolism in Parkinson's disease.Cell Rep2021
31327631Postmortem Cortical Transcriptomics of Lewy Body Dementia Reveal Mitochondrial Dysfunction and Lack of Neuroinflammation.Am J Geriatr Psychiatry2020
33145483Low Shear Stress Increases Recombinant Protein Production and High Shear Stress Increases Apoptosis in Human Cells.iScience2020
32917913Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals.Sci Rep2020
32916966Disease, Drugs and Dysbiosis: Understanding Microbial Signatures in Metabolic Disease and Medical Interventions.Microorganisms2020
32337855The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against non-alcoholic fatty liver disease.Mol Syst Biol2020
30606699Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis.EBioMedicine2019
31134131Multi-Omic Data Interpretation to Repurpose Subtype Specific Drug Candidates for Breast Cancer.Front Genet2019
29069445TCSBN: a database of tissue and cancer specific biological networks.Nucleic Acids Res2018
30050469Tamoxifen-Induced Apoptosis of MCF-7 Cells via GPR30/PI3K/MAPKs Interactions: Verification by ODE Modeling and RNA Sequencing.Front Physiol2018
29988585Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling.Front Physiol2018
29957873High Cell Density Perfusion Culture has a Maintained Exoproteome and Metabolome.Biotechnol J2018
30065658Metabolic Network-Based Identification and Prioritization of Anticancer Targets Based on Expression Data in Hepatocellular Carcinoma.Front Physiol2018
30323767ESS: A Tool for Genome-Scale Quantification of Essentiality Score for Reaction/Genes in Constraint-Based Modeling.Front Physiol2018
30482855Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes.Proc Natl Acad Sci U S A2018
28818916A pathology atlas of the human cancer transcriptome.Science2017
28698499Molecular Mechanisms behind Free Radical Scavengers Function against Oxidative Stress.Antioxidants (Basel)2017
27265370A systems biology approach to reconcile metabolic network models with application to Synechocystis sp. PCC 6803 for biofuel production.Mol Biosyst2016
26454274FogLight: an efficient matrix-based approach to construct metabolic pathways by search space reduction.Bioinformatics2016
24657638Cancer systems biology and modeling: microscopic scale and multiscale approaches.Semin Cancer Biol2015
24822031Genome scale modeling in systems biology: algorithms and resources.Curr Genomics2014
23174671HomoTarget: a new algorithm for prediction of microRNA targets in Homo sapiens.Genomics2013
24039752C-element: a new clustering algorithm to find high quality functional modules in PPI networks.PLoS One2013
23874428Reconstruction of an integrated genome-scale co-expression network reveals key modules involved in lung adenocarcinoma.PLoS One2013
22893106Candidate gene prioritization.Mol Genet Genomics2012
23133538Modeling of tumor progression in NSCLC and intrinsic resistance to TKI in loss of PTEN expression.PLoS One2012
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Collaborators

Adil Mardinoglu
Royal Institute of Technology Science for Life Laboratory Stockholm Sweden.
Co-authored papers 15
Mathias Uhl??n
KTH Royal Institute of Technology
Co-authored papers 12
Sunjae Lee
Gwangju Institute of Science and Technology
Co-authored papers 9
Rui Benfeitas
Stockholm University
Co-authored papers 8
Cheng Zhang
KTH-Royal Institute of Technology
Co-authored papers 7
Muhammad Arif
KTH Royal Institute of Technology
Co-authored papers 6
Jens Nielsen
Chalmers University of Technology
Co-authored papers 6
Johan Rockberg
KTH - Royal Institute of Technology
Co-authored papers 3
Zhengtao Liu
Shulan International Medical College, Zhejiang Shuren University
Co-authored papers 2
Magdalena Malm
KTH - Royal Institute of Technology
Co-authored papers 2
Fredrik Edfors
KTH Royal Institute of Technology
Co-authored papers 2
Abdellah Tebani
Normandie University UNIROUEN, INSERM U1245
Co-authored papers 2
Magnus Lundqvist
KTH - Royal Institute of Technology
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Kemal Sanli
Istanbul University
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Kalle von Feilitzen
KTH Royal Institute of Technology
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Nicholas J Talley
University of Newcastle
Co-authored papers 1
Per-Henrik Edqvist
Uppsala University
Co-authored papers 1
Jochen M Schwenk
KTH Royal Institute of Technology
Co-authored papers 1
Per Oksvold
KTH-Royal Institute of Technology
Co-authored papers 1
Johanna S M Mattsson
Uppsala University
Co-authored papers 1
Sophia Hober
KTH Royal Institute of Technology
Co-authored papers 1
Hans Brunnstr??m
Lund University
Co-authored papers 1
Anna-Luisa Volk
KTH - Royal Institute of Technology
Co-authored papers 1
Linn Fagerberg
KTH Royal Institute of Technology
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Michael L Gatza
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Cecilia Lindskog
Uppsala University
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Release 1.2