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Author Details

V V Solov'ev
Softberry Inc.
1956
175
38
PMIDPaper TitleJournal TitlePublished Year
36993855Two major chromosome evolution events with unrivaled conserved gene content in pomegranate.Front Plant Sci2023
31117933New insights from Opisthorchis felineus genome: update on genomics of the epidemiologically important liver flukes.BMC Genomics2019
27899667Rice SNP-seek database update: new SNPs, indels, and queries.Nucleic Acids Res2017
28082394TSSPlant: a new tool for prediction of plant Pol II promoters.Nucleic Acids Res2017
28158264Recognition of prokaryotic and eukaryotic promoters using convolutional deep learning neural networks.PLoS One2017
29141011Nucleotide patterns aiding in prediction of eukaryotic promoters.PLoS One2017
28849566Rule Mining Techniques to Predict Prokaryotic Metabolic Pathways.Methods Mol Biol2017
28886750Evidence-based gene models for structural and functional annotations of the oil palm genome.Biol Direct2017
27390860Prediction of Metabolic Pathway Involvement in Prokaryotic UniProtKB Data by Association Rule Mining.PLoS One2016
26142184Nsite, NsiteH and NsiteM computer tools for studying transcription regulatory elements.Bioinformatics2015
26472828Genome Sequence of a Multidrug-Resistant Strain of Stenotrophomonas maltophilia with Carbapenem Resistance, Isolated from King Abdullah Medical City, Makkah, Saudi Arabia.Genome Announc2015
26177965Karect: accurate correction of substitution, insertion and deletion errors for next-generation sequencing data.Bioinformatics2015
24479613Finding the missing honey bee genes: lessons learned from a genome upgrade.BMC Genomics2014
25273068Alignathon: a competitive assessment of whole-genome alignment methods.Genome Res2014
24847885The ctenophore genome and the evolutionary origins of neural systems.Nature2014
21926179Assemblathon 1: a competitive assessment of de novo short read assembly methods.Genome Res2011
21867574Towards the integration of genomics, epidemiological and clinical data.Genome Med2011
20075255Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.Science2010
20827586Identification of promoter regions and regulatory sites.Methods Mol Biol2010
19390049The genome sequence of taurine cattle: a window to ruminant biology and evolution.Science2009
18362917The genome of the model beetle and pest Tribolium castaneum.Nature2008
18094749A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.PLoS One2007
16925832Automatic annotation of eukaryotic genes, pseudogenes and promoters.Genome Biol2006
17095691The genome of the sea urchin Strongylocentrotus purpuratus.Science2006
16925837Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.Genome Biol2006
15722481Plant promoter prediction with confidence estimation.Nucleic Acids Res2005
15057824The DNA sequence and biology of human chromosome 19.Nature2004
14961025Community structure and metabolism through reconstruction of microbial genomes from the environment.Nature2004
15060011Automated whole-genome multiple alignment of rat, mouse, and human.Genome Res2004
12519961PlantProm: a database of plant promoter sequences.Nucleic Acids Res2003
14709175An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome.Genome Biol2003
14558655Abundance of plastid DNA insertions in nuclear genomes of rice and Arabidopsis.Plant Mol Biol2003
14555630Sequence alignment kernel for recognition of promoter regions.Bioinformatics2003
12824362PromH: Promoters identification using orthologous genomic sequences.Nucleic Acids Res2003
29973813The Pedant Human Genome Database ? Functional Annotation of the Human Genome.ScientificWorldJournal2002
11125105SpliceDB: database of canonical and non-canonical mammalian splice sites.Nucleic Acids Res2001
10779491Ab initio gene finding in Drosophila genomic DNA.Genome Res2000
11058137Analysis of canonical and non-canonical splice sites in mammalian genomes.Nucleic Acids Res2000
10713462A novel type of RNase III family proteins in eukaryotes.Gene2000
9847192INFOGENE: a database of known gene structures and predicted genes and proteins in sequences of genome sequencing projects.Nucleic Acids Res1999
10624522[WWWMGS: an integrated server for molecular-genetic studies].Biofizika1999
10487874Integrated databases and computer systems for studying eukaryotic gene expression.Bioinformatics1999
9783214GeneExpress: a computer system for description, analysis, and recognition of regulatory sequences in eukaryotic genome.Proc Int Conf Intell Syst Mol Biol1998
9697204Statistical significance of ungapped sequence alignments.Pac Symp Biocomput1998
9088705Recognition of 3'-processing sites of human mRNA precursors.Comput Appl Biosci1997
9149139Protein secondary structure prediction using local alignments.J Mol Biol1997
9322052The Gene-Finder computer tools for analysis of human and model organisms genome sequences.Proc Int Conf Intell Syst Mol Biol1997
9060413Analysis of mutation rates in the SMCY/SMCX genes shows that mammalian evolution is male driven.Mamm Genome1997
7584460Identification of human gene structure using linear discriminant functions and dynamic programming.Proc Int Conf Intell Syst Mol Biol1995
7781064Expression of msl-2 causes assembly of dosage compensation regulators on the X chromosomes and female lethality in Drosophila.Cell1995
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Collaborators

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 16
Co-authored papers 9
Lund University
Co-authored papers 5
University of Missouri
Co-authored papers 5
Baylor College of Medicine
Co-authored papers 5
Softberry Inc.
Co-authored papers 5
Baylor College of Medicine
Co-authored papers 5
Baylor College of Medicine
Co-authored papers 5
Baylor College of Medicine
Co-authored papers 5
Lawrence Berkeley National Laboratory
Co-authored papers 5
University of Houston
Co-authored papers 5
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 4
Baylor College of Medicine
Co-authored papers 4
Institute of Advanced Energy, Kyoto University
Co-authored papers 4
Royal Bournemouth Hospital
Co-authored papers 4
The University of Texas MD Anderson Cancer Center
Co-authored papers 4
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 4
Lawrence Berkeley National Laboratory
Co-authored papers 4
Baylor College of Medicine
Co-authored papers 4
Co-authored papers 4
Baylor College of Medicine
Co-authored papers 4
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 4
Baylor College of Medicine
Co-authored papers 4
Baylor College of Medicine
Co-authored papers 4
Baylor College of Medicine
Co-authored papers 4
Baylor College of Medicine
Co-authored papers 4
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 3
Eastern Michigan University.
Co-authored papers 3
Emory University School of Medicine
Co-authored papers 3
Co-authored papers 3