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Author Details

Robert Hoehndorf
King Abdullah University of Science and Technology
2006
121
28
PMIDPaper TitleJournal TitlePublished Year
36638616Klarigi: Characteristic explanations for semantic biomedical data.Comput Biol Med2023
37577579CAGI6 ID-Challenge: Assessment of phenotype and variant predictions in 415 children with Neurodevelopmental Disorders (NDDs).Res Sq2023
37550716Improving the classification of cardinality phenotypes using collections.J Biomed Semantics2023
37477873The Impact of Mechanical Cues on the Metabolomic and Transcriptomic Profiles of Human Dermal Fibroblasts Cultured in Ultrashort Self-Assembling Peptide 3D Scaffolds.ACS Nano2023
36638616Klarigi: Characteristic explanations for semantic biomedical data.Comput Biol Med2023
36534832mOWL: Python library for machine learning with biomedical ontologies.Bioinformatics2023
37479972Starvar: symptom-based tool for automatic ranking of variants using evidence from literature and genomes.BMC Bioinformatics2023
37550716Improving the classification of cardinality phenotypes using collections.J Biomed Semantics2023
37479972Starvar: symptom-based tool for automatic ranking of variants using evidence from literature and genomes.BMC Bioinformatics2023
37577579CAGI6 ID-Challenge: Assessment of phenotype and variant predictions in 415 children with Neurodevelopmental Disorders (NDDs).Res Sq2023
37477873The Impact of Mechanical Cues on the Metabolomic and Transcriptomic Profiles of Human Dermal Fibroblasts Cultured in Ultrashort Self-Assembling Peptide 3D Scaffolds.ACS Nano2023
36534832mOWL: Python library for machine learning with biomedical ontologies.Bioinformatics2023
35123470Evaluating semantic similarity methods for comparison of text-derived phenotype profiles.BMC Med Inform Decis Mak2022
35758802DeepGOZero: improving protein function prediction from sequence and zero-shot learning based on ontology axioms.Bioinformatics2022
35758016Contribution of model organism phenotypes to the computational identification of human disease genes.Dis Model Mech2022
35402106Combining biomedical knowledge graphs and text to improve predictions for drug-target interactions and drug-indications.PeerJ2022
34951628DeepSVP: integration of genotype and phenotype for structural variant prioritization using deep learning.Bioinformatics2022
35123470Evaluating semantic similarity methods for comparison of text-derived phenotype profiles.BMC Med Inform Decis Mak2022
35402106Combining biomedical knowledge graphs and text to improve predictions for drug-target interactions and drug-indications.PeerJ2022
35758802DeepGOZero: improving protein function prediction from sequence and zero-shot learning based on ontology axioms.Bioinformatics2022
35758016Contribution of model organism phenotypes to the computational identification of human disease genes.Dis Model Mech2022
34951628DeepSVP: integration of genotype and phenotype for structural variant prioritization using deep learning.Bioinformatics2022
33049044Semantic similarity and machine learning with ontologies.Brief Bioinform2021
34019664DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web.Nucleic Acids Res2021
33484944A fast, accurate, and generalisable heuristic-based negation detection algorithm for clinical text.Comput Biol Med2021
34009304DeepGOPlus: improved protein function prediction from sequence.Bioinformatics2021
33682875DeepViral: prediction of novel virus-host interactions from protein sequences and infectious disease phenotypes.Bioinformatics2021
33845909Improved characterisation of clinical text through ontology-based vocabulary expansion.J Biomed Semantics2021
33836447Towards similarity-based differential diagnostics for common diseases.Comput Biol Med2021
34320178DTI-Voodoo: machine learning over interaction networks and ontology-based background knowledge predicts drug-target interactions.Bioinformatics2021
33049044Semantic similarity and machine learning with ontologies.Brief Bioinform2021
33051643Predicting candidate genes from phenotypes, functions and anatomical site of expression.Bioinformatics2021
34600327Multi-faceted semantic clustering with text-derived phenotypes.Comput Biol Med2021
34425897Linking common human diseases to their phenotypes; development of a resource for human phenomics.J Biomed Semantics2021
34939069Effects of Negation and Uncertainty Stratification on Text-Derived Patient Profile Similarity.Front Digit Health2021
33682875DeepViral: prediction of novel virus-host interactions from protein sequences and infectious disease phenotypes.Bioinformatics2021
33484944A fast, accurate, and generalisable heuristic-based negation detection algorithm for clinical text.Comput Biol Med2021
33845909Improved characterisation of clinical text through ontology-based vocabulary expansion.J Biomed Semantics2021
33836447Towards similarity-based differential diagnostics for common diseases.Comput Biol Med2021
34939069Effects of Negation and Uncertainty Stratification on Text-Derived Patient Profile Similarity.Front Digit Health2021
34425897Linking common human diseases to their phenotypes; development of a resource for human phenomics.J Biomed Semantics2021
34600327Multi-faceted semantic clustering with text-derived phenotypes.Comput Biol Med2021
34019664DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web.Nucleic Acids Res2021
34320178DTI-Voodoo: machine learning over interaction networks and ontology-based background knowledge predicts drug-target interactions.Bioinformatics2021
34009304DeepGOPlus: improved protein function prediction from sequence.Bioinformatics2021
33051643Predicting candidate genes from phenotypes, functions and anatomical site of expression.Bioinformatics2021
31350877DeepGOPlus: improved protein function prediction from sequence.Bioinformatics2020
32308977BioHackathon 2015: Semantics of data for life sciences and reproducible research.F1000Res2020
31931870Combining lexical and context features for automatic ontology extension.J Biomed Semantics2020
31821406Formal axioms in biomedical ontologies improve analysis and interpretation of associated data.Bioinformatics2020
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Collaborators

Georgios V Gkoutos
Institute of Cancer and Genomic Sciences, University of Birmingham
Co-authored papers 52
Paul N Schofield
University of Cambridge
Co-authored papers 38
Maxat Kulmanov
King Abdullah University of Science and Technology.
Co-authored papers 17
Michel Dumontier
Institute of Data Science, Maastricht University
Co-authored papers 13
Dietrich Rebholz-Schuhmann
University of Cologne
Co-authored papers 12
Anika Oellrich
King's College London
Co-authored papers 10
Janet Kelso
Co-authored papers 8
Xin Gao
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 7
Takashi Gojobori
Co-authored papers 7
Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 6
Imane Boudellioua
King Fahd University of Petroleum and Minerals
Co-authored papers 5
Sarala M Wimalaratne
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 4
Rutger A Vos
Naturalis Biodiversity Center
Co-authored papers 4
Joachim Baran
Stanford Center for Biomedical Informatics Research, Stanford University
Co-authored papers 4
Erick Antezana
Norwegian University of Science and Technology
Co-authored papers 3
Mark D Wilkinson
Universidad Politecnica de Madrid (UPM)
Co-authored papers 3
Takatomo Fujisawa
National Institute of Genetics
Co-authored papers 3
Raoul J P Bonnal
National Institute for Molecular Genetics "Romeo ed Enrica Invernizzi"
Co-authored papers 3
N??ria Queralt-Rosinach
Leiden University Medical Center
Co-authored papers 3
Stefan T Arold
Co-authored papers 3
Nigel Hardy
Co-authored papers 3
Jerven Bolleman
carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4
Co-authored papers 3
Toshiaki Katayama
Database Center for Life Science
Co-authored papers 3
Bernard de Bono
Co-authored papers 3
Soichi Ogishima
Tohoku University Graduate School of Medicine
Co-authored papers 2
Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 2
Yasunori Yamamoto
Database Center for Life Science, Joint Support-Center for Data Science Research
Co-authored papers 2
Olivier Lichtarge
Baylor College of Medicine
Co-authored papers 2
John A C Archer
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 2
Maria J Martin
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Release 1.2