Skip to Main Content

Author Details

Juan Xu
College of Bioinformatics Science and Technology, Harbin Medical University
2011
106
29
PMIDPaper TitleJournal TitlePublished Year
37811897SORC: an integrated spatial omics resource in cancer.Nucleic Acids Res2024
37823596CancerProteome: a resource to functionally decipher the proteome landscape in cancer.Nucleic Acids Res2024
36099422IEAtlas: an atlas of HLA-presented immune epitopes derived from non-coding regions.Nucleic Acids Res2023
38028194Systematic analysis of DNA methylation-mediated TF dysregulation on lncRNAs reveals critical roles in tumor immunity.Mol Ther Nucleic Acids2023
37650118Insight into the regulatory mechanism of dynamic chromatin 3D interactions during cardiomyocyte differentiation in human.Mol Ther Nucleic Acids2023
37500893Deep immunophenotyping reveals clinically distinct cellular states and ecosystems in large-scale colorectal cancer.Commun Biol2023
37500645An overview of arsenic trioxide-involved combined treatment algorithms for leukemia: basic concepts and clinical implications.Cell Death Discov2023
37273782Landscape and perturbation of enhancer-driven core transcription regulatory circuits in cancer.Mol Ther Nucleic Acids2023
37438390A global database for modeling tumor-immune cell communication.Sci Data2023
37474972Correction: MIR22HG acts as a tumor suppressor via TGFβ/SMAD signaling and facilitates immunotherapy in colorectal cancer.Mol Cancer2023
37091230Prioritizing exhausted T cell marker genes highlights immune subtypes in pan-cancer.iScience2023
36805221Multi-omics characterization of RNA binding proteins reveals disease comorbidities and potential drugs in COVID-19.Comput Biol Med2023
36869336Correction: The involvement and therapeutic potential of lncRNA Kcnq1ot1/miR-34a-5p/Sirt1 pathway in arsenic trioxide-induced cardiotoxicity.J Transl Med2023
36681772Single-cell RNA binding protein regulatory network analyses reveal oncogenic HNRNPK-MYC signalling pathway in cancer.Commun Biol2023
36707890The involvement and therapeutic potential of lncRNA Kcnq1ot1/miR-34a-5p/Sirt1 pathway in arsenic trioxide-induced cardiotoxicity.J Transl Med2023
36533638Clinical and genomic characterization of mutational signatures across human cancers.Int J Cancer2023
36632748Spatial transcriptome analysis of long non-coding RNAs reveals tissue specificity and functional roles in cancer.J Zhejiang Univ Sci B2023
36271790ImmCluster: an ensemble resource for immunology cell type clustering and annotations in normal and cancerous tissues.Nucleic Acids Res2023
34570220TransLnc: a comprehensive resource for translatable lncRNAs extends immunopeptidome.Nucleic Acids Res2022
35676786The whole transcriptome analysis and the circRNA-lncRNA network construction in arsenic trioxide-treated mice myocardium.Biomed Pharmacother2022
35614079Pan-cancer analyses reveal the genetic and pharmacogenomic landscape of transient receptor potential channels.NPJ Genom Med2022
35766188Dynamic immune ecosystem of dengue infection revealed by single-cell sequencing.J Leukoc Biol2022
35722704PRES: a webserver for decoding the functional perturbations of RNA editing sites.Brief Bioinform2022
35356543Comprehensive characterization of human-virus protein-protein interactions reveals disease comorbidities and potential antiviral drugs.Comput Struct Biotechnol J2022
36463330Surveying lncRNA-lncRNA cooperations reveals dominant effect on tumor immunity cross cancers.Commun Biol2022
36461099Pan-cancer illumination of TRIM gene family reveals immunology regulation and potential therapeutic implications.Hum Genomics2022
36071454Long noncoding RNA LINC01132 enhances immunosuppression and therapy resistance via NRF1/DPP4 axis in hepatocellular carcinoma.J Exp Clin Cancer Res2022
35992268Editorial: Computational Identification of ceRNA Regulation.Front Mol Biosci2022
35189633Shedding light on the hidden human proteome expands immunopeptidome in cancer.Brief Bioinform2022
35069215Biphasic Effect of Pirfenidone on Angiogenesis.Front Pharmacol2022
35061901Pan-cancer assessment of mutational landscape in intrinsically disordered hotspots reveals potential driver genes.Nucleic Acids Res2022
32363380CeRNASeek: an R package for identification and analysis of ceRNA regulation.Brief Bioinform2021
33575259Dynamic Expression of m<sup>6</sup>A Regulators During Multiple Human Tissue Development and Cancers.Front Cell Dev Biol2021
33557819Pan-cancer characterization of expression and clinical relevance of m<sup>6</sup>A-related tissue-elevated long non-coding RNAs.Mol Cancer2021
34755873ImmReg: the regulon atlas of immune-related pathways across cancer types.Nucleic Acids Res2021
34513291ALKBH5-mediated m<sup>6</sup>A mRNA methylation governs human embryonic stem cell cardiac commitment.Mol Ther Nucleic Acids2021
34249108Editorial: Perturbation of RNA Binding Protein Regulation in Cancer.Front Genet2021
33341125RBP EIF2S2 Promotes Tumorigenesis and Progression by Regulating MYC-Mediated Inhibition via FHIT-Related Enhancers.Mol Ther2021
33456585ALKBH5 regulates cardiomyocyte proliferation and heart regeneration by demethylating the mRNA of YTHDF1.Theranostics2021
32778890SurvivalMeth: a web server to investigate the effect of DNA methylation-related functional elements on prognosis.Brief Bioinform2021
32127004MIR22HG acts as a tumor suppressor via TGFβ/SMAD signaling and facilitates immunotherapy in colorectal cancer.Mol Cancer2020
32059763RBP EIF2S2 Promotes Tumorigenesis and Progression by Regulating MYC-Mediated Inhibition via FHIT-Related Enhancers.Mol Ther2020
31969690Targeting LncDACH1 promotes cardiac repair and regeneration after myocardium infarction.Cell Death Differ2020
32081859Pan-cancer characterization of immune-related lncRNAs identifies potential oncogenic biomarkers.Nat Commun2020
32002550Complex impact of DNA methylation on transcriptional dysregulation across 22 human cancer types.Nucleic Acids Res2020
33461655Ultrasound-Mediated Oxygen Delivery for Enhanced Radiotherapy with Ultrasound Imaging Guidance.J Biomed Nanotechnol2020
32606334A time-resolved proteotranscriptomics atlas of the human placenta reveals pan-cancer immunomodulators.Signal Transduct Target Ther2020
32193291LncSpA: LncRNA Spatial Atlas of Expression across Normal and Cancer Tissues.Cancer Res2020
29077860Systematic review of computational methods for identifying miRNA-mediated RNA-RNA crosstalk.Brief Bioinform2019
31956652A Novel Approach to Identify Enhancer lincRNAs by Integrating Genome, Epigenome, and Regulatome.Front Bioeng Biotechnol2019
  • 1 - 50 of 106

Recommended Authors

Hui Yu
Sylvester Comprehensive Cancer Center, University of Miami
Career Start Year 2017
Number of shared co-authors 1
Yuxin Lin
The First Affiliated Hospital of Soochow University
Career Start Year 2014
Number of shared co-authors 1
Tao Wang
University of Texas Southwestern Medical Center
Career Start Year 2014
Number of shared co-authors 0
Travers Ching
Adaptive Biotechnologies
Career Start Year 2014
Number of shared co-authors 0
Yuan Yuan
The University of Texas MD Anderson Cancer Center
Career Start Year 2011
Number of shared co-authors 1
Asha A Nair
Mayo Clinic
Career Start Year 2010
Number of shared co-authors 0
Qianghu Wang
Center for Global Health, School of Public Health, Nanjing Medical University
Career Start Year 2009
Number of shared co-authors 0
Bogumil Kaczkowski
RIKEN Center for Integrative Medical Sciences
Career Start Year 2009
Number of shared co-authors 0
Qiyuan Li
National Institute of Data Science in Health and Medicine, Xiamen University
Career Start Year 2008
Number of shared co-authors 0
Jing Chen
College of Bioinformatics Science and Technology, Harbin Medical University
Career Start Year 2007
Number of shared co-authors 0
Lana X Garmire
University of Michigan ann arbor
Career Start Year 2007
Number of shared co-authors 0
Eunjee Lee
Chungnam National University
Career Start Year 2007
Number of shared co-authors 0
Yang Xie
Quantitative Biomedical Research Center
Career Start Year 2007
Number of shared co-authors 1
Christopher A Maher
Washington University in St Louis
Career Start Year 2006
Number of shared co-authors 1
Peilin Jia
Center for Precision Health, The University of Texas Health Science Center at Houston
Career Start Year 2006
Number of shared co-authors 3
Xiaotu Ma
St. Jude Children's Research Hospital
Career Start Year 2006
Number of shared co-authors 1
Chao Cheng
Baylor College of Medicine
Career Start Year 2005
Number of shared co-authors 0
Han Liang
MD Anderson Cancer Center
Career Start Year 2005
Number of shared co-authors 5
Liuqing Yang
University of Tennessee Health Science Center
Career Start Year 2004
Number of shared co-authors 3
Xianghong Jasmine Zhou
David Geffen School of Medicine, University of California at Los Angeles
Career Start Year 2004
Number of shared co-authors 3
Sebastian Schmeier
Massey University
Career Start Year 2004
Number of shared co-authors 0
Amy G Robertson
Present address: Dxige Research Inc.
Career Start Year 2003
Number of shared co-authors 3
Bairong Shen
Institute for Systems Genetics, Western China Hospital, Sichuan University
Career Start Year 2003
Number of shared co-authors 2
Pedro A F Galante
Hospital Sirio Libanes
Career Start Year 2003
Number of shared co-authors 0
Pavel Sumazin
Baylor College of Medicine
Career Start Year 2003
Number of shared co-authors 2
Emiliano Dalla
University of Udine
Career Start Year 2002
Number of shared co-authors 1
Howard H Yang
Center for Cancer Research, National Cancer Institute
Career Start Year 2002
Number of shared co-authors 0
Yidong Chen
The University of Texas Health Science Center at San Antonio
Career Start Year 2001
Number of shared co-authors 0
Sven Diederichs
Medical Center - University of Freiburg, University of Freiburg
Career Start Year 1999
Number of shared co-authors 0
Zhongming Zhao
Center for Precision Health, The University of Texas Health Science Center at Houston
Career Start Year 1998
Number of shared co-authors 3

Collaborators

Yongsheng Li
Harbin Medical University
Co-authored papers 71
Song Yi
Livestrong Cancer Institutes, Dell Medical School, The University of Texas at Austin
Co-authored papers 6
Nidhi Sahni
The University of Texas MD Anderson Cancer Center
Co-authored papers 5
Daniel J McGrail
Center for Immunotherapy and Precision Immuno-Oncology, Cleveland Clinic
Co-authored papers 3
Gordon B Mills
Knight Cancer Institute, Oregon Health and Sciences University
Co-authored papers 2
Rita Pancsa
Institute of Enzymology, HUN-REN Research Centre for Natural Sciences
Co-authored papers 2
Xiaoqian Jiang
Carnegie Mellon University, The University of Texas Health Science Center at Houston, University of California San Diego
Co-authored papers 1
Boranai Tychhon
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
Shiaw-Yih Lin
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
Wei Wei
Co-authored papers 1
Xu Hua
Institute for Cancer Genetics, Columbia University Irving Medical Center
Co-authored papers 1
Jasmin Coulombe-Huntington
Institute for Research in Immunology and Cancer, Universite de Montreal
Co-authored papers 1
Dhanistha Sudhakar
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
Madan Mohan Babu
St. Jude Children's Research Hospital
Co-authored papers 1
Limei Hu
Aier Eye Hospital of Wuhan University
Co-authored papers 1
Huihui Fan
Center for Precision Health, The University of Texas Health Science Center at Houston
Co-authored papers 1
Mike Tyers
Institute for Research in Immunology and Cancer (IRIC), Universite de Montreal
Co-authored papers 1
Shijun Hu
Co-authored papers 1
Michael Ryan
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
Release 1.2