Author details

Full Name

H S Wiley

Affiliation

ORCID

Career Start Year

1960

Papers

163

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36635119	Addressing the genetic/nongenetic duality in cancer with systems biology.	Trends Cancer	2023
37577496	A Phosphoproteomics Data Resource for Systems-level Modeling of Kinase Signaling Networks.		2023
36770810	Targeted Quantification of Protein Phosphorylation and Its Contributions towards Mathematical Modeling of Signaling Pathways.	Molecules	2023
36969954	Dynamics and Sensitivity of Signaling Pathways.		2022
36111865	SBbadger: biochemical reaction networks with definable degree distributions.		2022
34351778	Facile One-Pot Nanoproteomics for Label-Free Proteome Profiling of 50-1000 Mammalian Cells.	J Proteome Res	2021
33649493	Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics.	Commun Biol	2021
33113355	Receptor-Driven ERK Pulses Reconfigure MAPK Signaling and Enable Persistence of Drug-Adapted BRAF-Mutant Melanoma Cells.	Cell Syst	2020
32884070	Publisher Correction: Transcriptomic and proteomic signatures of stemness and differentiation in the colon crypt.	Commun Biol	2020
30557009	Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells.	Anal Chem	2019
29584399	Targeted Quantification of Phosphorylation Dynamics in the Context of EGFR-MAPK Pathway.	Anal Chem	2018
29890950	Blazing Signature Filter: a library for fast pairwise similarity comparisons.	BMC Bioinformatics	2018
30302281	A combination of TLR-4 agonist and saponin adjuvants increases antibody diversity and protective efficacy of a recombinant West Nile Virus antigen.	npj Vaccines	2018
30139877	A systems perspective of heterocellular signaling.	Essays in Biochemistry	2018
30271983	Facile carrier-assisted targeted mass spectrometric approach for proteomic analysis of low numbers of mammalian cells.	Commun Biol	2018
29300164	How low can you go?	eLife	2018
27718207	Molecular Methods and Bioinformatic Tools for Adjuvant Characterization by High-Throughput Sequencing.	Methods in Molecular Biology	2017
28659875	Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated 'Omics Approach.	Front Microbiol	2017
29284127	Decoding Signal Processing at the Single-Cell Level.	Cell Systems	2017
27405978	Science Signaling Podcast for 12 July 2016: Adaptor proteins limit signaling.	Science Signaling	2016
27109194	Selection of therapeutic H5N1 monoclonal antibodies following IgVH repertoire analysis in mice.	Antiviral Research	2016
27405981	Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway.	Sci Signal	2016
25517423	Sensitive targeted quantification of ERK phosphorylation dynamics and stoichiometry in human cells without affinity enrichment.	Anal Chem	2015
24781900	Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing.	ISME Journal	2014
25335688	Open questions: the disrupted circuitry of the cancer cell.	BMC Biology	2014
24013225	Autocrine HBEGF expression promotes breast cancer intravasation, metastasis and macrophage-independent invasion in vivo.	Oncogene	2014
23840410	Coregulation of Terpenoid Pathway Genes and Prediction of Isoprene Production in Bacillus subtilis Using Transcriptomics.	PLoS ONE	2013
24081429	Changes in translational efficiency is a dominant regulatory mechanism in the environmental response of bacteria.	Integr Biol (Camb)	2013
22479638	Network analysis of epidermal growth factor signaling using integrated genomic, proteomic and phosphorylation data.	PLoS One	2012
22952062	Integrated experimental and model-based analysis reveals the spatial aspects of EGFR activation dynamics.	Mol Biosyst	2012
22485116	Improving RNA-Seq Precision with MapAl.	Frontiers in Genetics	2012
21685096	Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling.		2011
21325205	Integrating multiple types of data for signaling research: challenges and opportunities.	Science Signaling	2011
21795589	Targeting TLRs expands the antibody repertoire in response to a malaria vaccine.	Science Translational Medicine	2011
20016498	Basic fibroblast growth factor regulates persistent ERK oscillations in premalignant but not malignant JB6 cells.	J Invest Dermatol	2010
20810275	Oscillatory dynamics of the extracellular signal-regulated kinase pathway.	Curr Opin Genet Dev	2010
20530570	The heparin-binding domain of HB-EGF mediates localization to sites of cell-cell contact and prevents HB-EGF proteolytic release.	J Cell Sci	2010
20458382	Structure of the EGF receptor transactivation circuit integrates multiple signals with cell context.	Mol Biosyst	2010
20052905	An analysis pipeline for the inference of protein-protein interaction networks.	Int J Data Min Bioinform	2009
19534553	An extensive survey of tyrosine phosphorylation revealing new sites in human mammary epithelial cells.	J Proteome Res	2009
19878579	HER/ErbB receptor interactions and signaling patterns in human mammary epithelial cells.	BMC Cell Biol	2009
19953086	Rapid and sustained nuclear-cytoplasmic ERK oscillations induced by epidermal growth factor.	Mol Syst Biol	2009
18166007	The mammary epithelial cell secretome and its regulation by signal transduction pathways.	J Proteome Res	2008
18974169	Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models.	Bioinformatics	2008
18782770	Multiple mechanisms are responsible for transactivation of the epidermal growth factor receptor in mammary epithelial cells.	J Biol Chem	2008
18780891	Smad signaling dynamics: insights from a parsimonious model.	Sci Signal	2008
18590317	A general system for studying protein-protein interactions in Gram-negative bacteria.	J Proteome Res	2008
17542642	Cell surface receptors for signal transduction and ligand transport: a design principles study.	PLoS Comput Biol	2007
17996096	Receptor downregulation and desensitization enhance the information processing ability of signalling receptors.	BMC Syst Biol	2007
17324940	Enabling high-throughput data management for systems biology: the Bioinformatics Resource Manager.	Bioinformatics	2007