Author details

Full Name

Ville Mustonen

Affiliation

University of Helsinki

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36596459	Understanding cellular growth strategies via optimal control.	J R Soc Interface	2023
37498846	Time-travelling pathogens and their risk to ecological communities.	PLoS Comput Biol	2023
37400577	Steering and controlling evolution - from bioengineering to fighting pathogens.	Nat Rev Genet	2023
36697836	Author Correction: The repertoire of mutational signatures in human cancer.	Nature	2023
36068219	The mutational signatures of formalin fixation on the human genome.	Nat Commun	2022
35784450	Strong selective environments determine evolutionary outcome in time-dependent fitness seascapes.	Evol Lett	2022
36474143	Identification of multiplicatively acting modulatory mutational signatures in cancer.	BMC Bioinformatics	2022
33408222	Genomic Epidemiology and Evolution of <i>Escherichia coli</i> in Wild Animals in Mexico.	mSphere	2021
34555024	Drug-induced resistance evolution necessitates less aggressive treatment.	PLoS Comput Biol	2021
34427505	Machine Learning Prediction of Resistance to Subinhibitory Antimicrobial Concentrations from Escherichia coli Genomes.	mSystems	2021
32778754	Repeatable ecological dynamics govern the response of experimental communities to antibiotic pulse perturbation.	Nat Ecol Evol	2020
32025018	The repertoire of mutational signatures in human cancer.	Nature	2020
33370253	Multiobjective optimization identifies cancer-selective combination therapies.	PLoS Comput Biol	2020
32737164	Eco-evolutionary control of pathogens.	Proc Natl Acad Sci U S A	2020
30657986	Shared Molecular Targets Confer Resistance over Short and Long Evolutionary Timescales.	Mol Biol Evol	2019
31738747	Contrasting the impact of cytotoxic and cytostatic drug therapies on tumour progression.	PLoS Comput Biol	2019
28958783	Evaluating genetic drift in time-series evolutionary analysis.	J Theor Biol	2018
30072377	Uncovering Natural Longevity Alleles from Intercrossed Pools of Aging Fission Yeast Cells.	Genetics	2018
30177804	The evolutionary landscape of colorectal tumorigenesis.	Nat Ecol Evol	2018
30550564	Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data.	PLoS Comput Biol	2018
28704525	Rapid identification of genes controlling virulence and immunity in malaria parasites.	PLoS Pathog	2017
29045840	Clonal Heterogeneity Influences the Fate of New Adaptive Mutations.	Cell Rep	2017
28812721	Predicting evolution.	Nat Ecol Evol	2017
27135926	Landscape of somatic mutations in 560 breast cancer whole-genome sequences.	Nature	2016
26414517	Adenoma development in familial adenomatous polyposis and MUTYH-associated polyposis: somatic landscape and driver genes.	J Pathol	2016
27121471	Development and validation of a comprehensive genomic diagnostic tool for myeloid malignancies.	Blood	2016
25587136	The value of monitoring to control evolving populations.	Proc Natl Acad Sci U S A	2015
26125594	Pathway and network analysis of cancer genomes.	Nat Methods	2015
24425782	A high-definition view of functional genetic variation from natural yeast genomes.	Mol Biol Evol	2014
25080215	Identifying selection in the within-host evolution of influenza using viral sequence data.	PLoS Comput Biol	2014
24882004	High-definition reconstruction of clonal composition in cancer.	Cell Rep	2014
23628380	EMu: probabilistic inference of mutational processes and their localization in the cancer genome.	Genome Biol	2013
24037264	High-resolution mapping of complex traits with a four-parent advanced intercross yeast population.	Genetics	2013
23900255	Computational approaches to identify functional genetic variants in cancer genomes.	Nat Methods	2013
23658715	Inferring genome-wide recombination landscapes from advanced intercross lines: application to yeast crosses.	PLoS One	2013
22114362	Quantifying selection acting on a complex trait using allele frequency time series data.	Mol Biol Evol	2012
23171476	GraphAlignment: Bayesian pairwise alignment of biological networks.	BMC Syst Biol	2012
23300444	Components of selection in the evolution of the influenza virus: linkage effects beat inherent selection.	PLoS Pathog	2012
22223745	A method to infer positive selection from marker dynamics in an asexual population.	Bioinformatics	2012
21248752	Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma.	Nature	2011
21995386	Somatic SF3B1 mutation in myelodysplasia with ring sideroblasts.	N Engl J Med	2011
21926305	Emergent neutrality in adaptive asexual evolution.	Genetics	2011
21900272	Distinguishing driver and passenger mutations in an evolutionary history categorized by interference.	Genetics	2011
21441214	Germline fitness-based scoring of cancer mutations.	Genetics	2011
20145113	Fitness flux and ubiquity of adaptive evolution.	Proc Natl Acad Sci U S A	2010
19232770	From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation.	Trends Genet	2009
18352233	Molecular evolution under fitness fluctuations.	Phys Rev Lett	2008
18723669	Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites.	Proc Natl Acad Sci U S A	2008
17287357	Adaptations to fluctuating selection in Drosophila.	Proc Natl Acad Sci U S A	2007
15903492	Equilibrium statistical mechanics of a grain boundary.	Phys Rev E Stat Nonlin Soft Matter Phys	2005

1 - 50 of 53

Oana Carja

Carnegie Mellon University

Career Start Year 2012

Number of shared co-authors 0

Chase W Nelson

Biodiversity Research Center, Taiwan Institute for Comparative Genomics

Career Start Year 2011

Number of shared co-authors 1

Tina Wang

Harvard University

Career Start Year 2011

Number of shared co-authors 1

Michael C Maher

Vir Biotechnology Inc.

Career Start Year 2011

Number of shared co-authors 0

Christian D Huber

Eberly College of Science, Pennsylvania State University

Career Start Year 2007

Number of shared co-authors 0

Fergal Casey

Biogen Inc.

Career Start Year 2006

Number of shared co-authors 0

Fabio Zanini

Stanford University

Career Start Year 2006

Number of shared co-authors 0

Raul Rabadan

Columbia University Vagelos College of Physicians and Surgeons

Career Start Year 2006

Number of shared co-authors 1

Ryan D Hernandez

University of California san francisco

Career Start Year 2005

Number of shared co-authors 2

Konrad Scheffler

Illumina Inc.

Career Start Year 2005

Number of shared co-authors 0

Philipp W Messer

University of Otago

Career Start Year 2005

Number of shared co-authors 0

Alex K Lancaster

Ronin Institute

Career Start Year 2003

Number of shared co-authors 0

Benjamin D Greenbaum

Memorial Sloan Kettering Cancer Center

Career Start Year 2003

Number of shared co-authors 1

Ralph Haygood

Ronin Institute for Independent Scholarship

Career Start Year 2002

Number of shared co-authors 0

Katherine S Pollard

Gladstone Institutes

Career Start Year 2002

Number of shared co-authors 3

Erik van Nimwegen

University of Basel

Career Start Year 1998

Number of shared co-authors 2

Philip Awadalla

Ontario Institute for Cancer Research

Career Start Year 1997

Number of shared co-authors 6

David A Liberles

Temple University

Career Start Year 1996

Number of shared co-authors 0

Gil McVean

Big Data Institute, University of Oxford

Career Start Year 1995

Number of shared co-authors 9

Pietro Li??

University of Cambridge

Career Start Year 1994

Number of shared co-authors 5

Martin J Lercher

Institute for Computer Science, Heinrich Heine University

Career Start Year 1994

Number of shared co-authors 0

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 1

Sergei Maslov

University of Illinois Urbana-Champaign

Career Start Year 1993

Number of shared co-authors 0

Joshua L Cherry

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1993

Number of shared co-authors 2

Fran Supek

Catalan Institution for Research and Advanced Studies (ICREA)

Career Start Year 1992

Number of shared co-authors 1

Dmitri A Petrov

Stanford University

Career Start Year 1991

Number of shared co-authors 0

Aviv Bergman

Albert Einstein College of Medicine

Career Start Year 1990

Number of shared co-authors 0

Simon Tavar??

Irving Institute for Cancer Dynamics, Columbia University

Career Start Year 1979

Number of shared co-authors 25

Eytan Ruppin

National Cancer Institute

Career Start Year 1971

Number of shared co-authors 5

B Jesse Shapiro

McGill University

Career Start Year 1964

Number of shared co-authors 2

row(s) 1 - 30 of 30

Adam Butler

Wellcome Sanger Institute

Co-authored papers 4

Michael R Stratton

Wellcome Sanger Institute

Co-authored papers 4

Peter J Campbell

Wellcome Sanger Institute

Co-authored papers 4

Nuria Lopez-Bigas

Universitat Pompeu Fabra

Co-authored papers 4

Ludmil B Alexandrov

Moores Cancer Center, university of california san diego

Co-authored papers 3

Phillip A Futreal

The University of Texas MD Anderson Cancer Center

Co-authored papers 3

Jon Teague

Wellcome Sanger Institute

Co-authored papers 3

Stuart McLaren

Wellcome Trust Sanger Institute

Co-authored papers 3

David Jones

Wellcome Sanger Institute

Co-authored papers 3

Keiran Raine

Wellcome Sanger Institute

Co-authored papers 3

Laura Mudie

Wellcome Trust Sanger Institute

Co-authored papers 2

Kyle R Covington

Baylor College of Medicine

Co-authored papers 2

John V Pearson

QIMR Berghofer Medical Research Institute

Co-authored papers 2

David C Wedge

Manchester Cancer Research Centre, University of Manchester

Co-authored papers 2

Leszek J Klimczak

National Institute of Environmental Health Sciences (NIEHS)

Co-authored papers 2

Miguel Vazquez

Norwegian University of Science and Technology

Co-authored papers 2

Paul C Boutros

University of California los angeles

Co-authored papers 2

Joshua M Stuart

University of California at Santa Cruz

Co-authored papers 2

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Co-authored papers 2

Pau Creixell

Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology

Co-authored papers 2

Dmitry A Gordenin

National Institute of Environmental Health Sciences (NIEHS)

Co-authored papers 2

Chris Greenman

University of East Anglia

Co-authored papers 2

Chris Sander

Broad Institute of MIT and Harvard

Co-authored papers 2

Jaegil Kim

Co-authored papers 2

Amin Zia

Ontario Institute for Cancer Research

Co-authored papers 2

Rune Linding

Humboldt-Universitat zu Berlin

Co-authored papers 2

Abel Gonzalez-Perez

Universitat Pompeu Fabra

Co-authored papers 2

Tatsuhiro Shibata

Kurume University School of Medicine

Co-authored papers 2

Richard Durbin

University of Cambridge

Co-authored papers 2

Serena Nik-Zainal

Early Cancer Institute, University of Cambridge

Co-authored papers 2

1 - 30

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