Author details

Full Name

Jamie J Cannone

Affiliation

The University of Texas at Austin

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
34108470	R2DT is a framework for predicting and visualising RNA secondary structure using templates.	Nat Commun	2021
32785681	Supersized Ribosomal RNA Expansion Segments in Asgard Archaea.	Genome Biol Evol	2020
27794554	RNAcentral: a comprehensive database of non-coding RNA sequences.	Nucleic Acids Res	2017
26048960	R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server.	Nucleic Acids Res	2015
23291551	Specificity between lactobacilli and hymenopteran hosts is the exception rather than the rule.	Appl Environ Microbiol	2013
24565058	Two accurate sequence, structure, and phylogenetic template-based RNA alignment systems.	BMC Syst Biol	2013
22761677	The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum.	PLoS One	2012
24772376	An Accurate Scalable Template-based Alignment Algorithm.	Proceedings (IEEE Int Conf Bioinformatics Biomed)	2012
22983261	RNA2DMap: A Visual Exploration Tool of the Information in RNA's Higher-Order Structure.	Proceedings (IEEE Int Conf Bioinformatics Biomed)	2011
20813041	Fragmentation of the large subunit ribosomal RNA gene in oyster mitochondrial genomes.	BMC Genomics	2010
19789725	Monophyly of terrestrial adephagan beetles as indicated by three nuclear genes (Coleoptera: Carabidae and Trachypachidae).	Zool Scr	2009
20224747	The limits of nuclear encoded SSU rDNA for resolving the diatom phylogeny.	Eur J Phycol	2009
18400176	Structure of the mammalian 80S ribosome at 8.7 A resolution.	Structure	2008
17069639	Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements.	Insect Mol Biol	2006
15373807	A secondary structural model of the 28S rRNA expansion segments D2 and D3 from rootworms and related leaf beetles (Coleoptera: Chrysomelidae; Galerucinae).	Insect Mol Biol	2004
15296519	Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction.	BMC Bioinformatics	2004
12473452	The lonepair triloop: a new motif in RNA structure.	J Mol Biol	2003
13678681	Phylogenetic relationships among 28 spirotrichous ciliates documented by rDNA.	Mol Phylogenet Evol	2003
13678678	ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae.	Mol Phylogenet Evol	2003
12716459	The exon context and distribution of Euascomycetes rRNA spliceosomal introns.	BMC Evol Biol	2003
11869452	The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.	BMC Bioinformatics	2002
12144780	Modeling a minimal ribosome based on comparative sequence analysis.	J Mol Biol	2002
12368097	Distribution of rRNA introns in the three-dimensional structure of the ribosome.	J Mol Biol	2002
12127448	The accuracy of ribosomal RNA comparative structure models.	Curr Opin Struct Biol	2002
11504846	A structural and phylogenetic analysis of the group IC1 introns in the order Bangiales (Rhodophyta).	Mol Biol Evol	2001
11570520	Group I intron lateral transfer between red and brown algal ribosomal RNA.	Curr Genet	2001
11453684	AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16 S and 23 S rRNA helices.	J Mol Biol	2001
11504860	Accelerated evolution of functional plastid rRNA and elongation factor genes due to reduced protein synthetic load after the loss of photosynthesis in the chlorophyte alga Polytoma.	Mol Biol Evol	2001
11104069	Protistan parasite QPX of hard-shell clam Mercenaria mercenaria is a member of Labyrinthulomycota.	Dis Aquat Organ	2000
11170737	Identification of group-I introns at three different positions within the 28S rDNA gene of the entomopathogenic fungus Metarhizium anisopliae var. anisopliae.	Fungal Genet Biol	2000
11090278	A story: unpaired adenosine bases in ribosomal RNAs.	J Mol Biol	2000
10891269	Predicting U-turns in ribosomal RNA with comparative sequence analysis.	J Mol Biol	2000
10907136	Ichthyophonus irregularis sp. nov. from the yellowtail flounder Limanda ferruginea from the Nova Scotia shelf.	Dis Aquat Organ	2000

1 - 33 of 33

Corey M Hudson

Informatics Institute, University of Missouri

Career Start Year 2011

Number of shared co-authors 7

Wataru Iwasaki

the University of Tokyo

Career Start Year 2006

Number of shared co-authors 0

Christopher J Fields

University of Illinois Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 0

Alexander Maxwell Burroughs

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 2005

Number of shared co-authors 0

Toni Gabald??n

Catalan Institution for Research and Advanced Studies

Career Start Year 2003

Number of shared co-authors 0

Jun Yu

Beijing Institute of Genomics, Chinese Academy of Sciences

Career Start Year 2001

Number of shared co-authors 1

Jo??o C Setubal

Chemistry Institute, Universidade de Sao Paulo - USP

Career Start Year 2000

Number of shared co-authors 1

Karen Moore

University of Exeter

Career Start Year 2000

Number of shared co-authors 1

Thomas Junier

Institute of Biology, University of Neuchatel

Career Start Year 1998

Number of shared co-authors 0

Douglas B Rusch

Center for Genomics and Bioinformatics, Indiana University

Career Start Year 1998

Number of shared co-authors 0

Jonathan H Badger

Center for Cancer Research, National Cancer Institute, National Institutes of Health

Career Start Year 1997

Number of shared co-authors 1

Aaron L Halpern

Illumina Inc.

Career Start Year 1995

Number of shared co-authors 0

Evgeny M Zdobnov

University of Geneva Medical School

Career Start Year 1995

Number of shared co-authors 0

Sandra W Clifton

Garvan Institute of Medical Research

Career Start Year 1994

Number of shared co-authors 1

Derek J Taylor

Case Western Reserve University

Career Start Year 1993

Number of shared co-authors 4

Keith A Crandall

US National Museum of Natural History, Smithsonian Institution

Career Start Year 1992

Number of shared co-authors 1

Martijn A Huynen

Radboud University Medical Centre Nijmegen

Career Start Year 1992

Number of shared co-authors 2

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Career Start Year 1992

Number of shared co-authors 2

Arcady Mushegian

National Science Foundation

Career Start Year 1991

Number of shared co-authors 0

Asaf Salamov

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory

Career Start Year 1991

Number of shared co-authors 2

Giddy Landan

Institute of General Microbiology, Kiel University

Career Start Year 1990

Number of shared co-authors 0

Anna Marie Pyle

Yale University, USA Howard Hughes Medical Institute

Career Start Year 1989

Number of shared co-authors 0

Owen White

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 1988

Number of shared co-authors 6

Dan Graur

University of Houston

Career Start Year 1982

Number of shared co-authors 0

Brian J Haas

Broad Institute of MIT and Harvard

Career Start Year 1981

Number of shared co-authors 1

Gary J Olsen

University of Illinois

Career Start Year 1980

Number of shared co-authors 0

Andrey A Mironov

Lomonosov Moscow State University

Career Start Year 1979

Number of shared co-authors 0

Gregory A Buck

Virginia Commonwealth University.

Career Start Year 1978

Number of shared co-authors 1

Alain Laederach

University of North Carolina at Chapel Hill

Career Start Year 1972

Number of shared co-authors 1

John M Logsdon

University of Iowa

Career Start Year 1971

Number of shared co-authors 0

row(s) 1 - 30 of 30

Robin R Gutell

The University of Texas at Austin

Co-authored papers 32

Daniel P Miranker

Department of Computer Sciences The University of Texas at Austin Austin

Co-authored papers 2

Stephen C Harvey

University of Pennsylvania

Co-authored papers 2

Robert D Finn

European Bioinformatics Institute

Co-authored papers 2

Todd M Lowe

Co-authored papers 2

Petra Fey

Center for Genetic Medicine, Northwestern University.

Co-authored papers 1

Patrick M Gaffney

Co-authored papers 1

Andrej Sali (CM4AI)

University of California San Francisco

Co-authored papers 1

Pieter Mestdagh

Co-authored papers 1

Weimin Zhu

Co-authored papers 1

Daniel McDonald

University of California San Diego

Co-authored papers 1

Siddhartha Basu

West Bengal University of Animal and Fishery Sciences

Co-authored papers 1

Guy Cochrane

European Bioinformatics Institute

Co-authored papers 1

Valerie Wood

University of Cambridge

Co-authored papers 1

J Michael Cherry

Stanford University

Co-authored papers 1

Narayanan Eswar

University of California at San Francisco

Co-authored papers 1

Scott M Stagg

Florida State University

Co-authored papers 1

Tanya Z Berardini

Carnegie Institution for Science

Co-authored papers 1

Adam Frankish

Co-authored papers 1

Ioannis S Vlachos

Harvard Medical School

Co-authored papers 1

Rajendra K Agrawal

School of Public Health, University at Albany

Co-authored papers 1

Neocles B Leontis

Bowling Green State University

Co-authored papers 1

Maya Topf

Leibniz-Institut fur Virologie (LIV)

Co-authored papers 1

Christopher W Akey

Boston University, Chobanian and Avedisian School of Medicine

Co-authored papers 1

Stacia R Engel

Stanford University

Co-authored papers 1

Eva Huala

Carnegie Institution for Science

Co-authored papers 1

Marcel E Dinger

The University of Sydney

Co-authored papers 1

Preethi Chandramouli

Harvard University

Co-authored papers 1

Alex Bateman

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 1

Jean-Fran??ois M??n??tret

IGBMC (Institute of Genetics and of Molecular and Cellular Biology)

Co-authored papers 1

1 - 30

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