Author details

Full Name

Thomas L Casavant

Affiliation

The University of Iowa College of Nursing.

ORCID

Career Start Year

1999

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36778238	Assessing Variants of Uncertain Significance Implicated in Hearing Loss Using a Comprehensive Deafness Proteome.	Res Sq	2023
37526158	A generalized Kirkwood implicit solvent for the polarizable AMOEBA protein model.	J Chem Phys	2023
37086329	Assessing variants of uncertain significance implicated in hearing loss using a comprehensive deafness proteome.	Hum Genet	2023
35038006	AudioGene: refining the natural history of KCNQ4, GSDME, WFS1, and COCH-associated hearing loss.	Hum Genet	2022
33769814	Implicit Solvents for the Polarizable Atomic Multipole AMOEBA Force Field.	J Chem Theory Comput	2021
31002689	FDG PET based prediction of response in head and neck cancer treatment: Assessment of new quantitative imaging features.	PLoS One	2019
31327459	Structural Insights into Hearing Loss Genetics from Polarizable Protein Repacking.	Biophys J	2019
31208324	Machine learning with the TCGA-HNSC dataset: improving usability by addressing inconsistency, sparsity, and high-dimensionality.	BMC Bioinformatics	2019
30245029	Genomic Landscape and Mutational Signatures of Deafness-Associated Genes.	Am J Hum Genet	2018
29060629	Development of a radiobiological evaluation tool to assess the expected clinical impacts of contouring accuracy between manual and semi-automated segmentation algorithms.	Annu Int Conf IEEE Eng Med Biol Soc	2017
27229768	Whole-gene sequencing investigation of SAT1 in attempted suicide.	Am J Med Genet B Neuropsychiatr Genet	2016
26530094	Audioprofile Surfaces: The 21st Century Audiogram.	Ann Otol Rhinol Laryngol	2016
25595567	CNV-ROC: A cost effective, computer-aided analytical performance evaluator of chromosomal microarrays.	J Biomed Inform	2015
25123904	Cordova: web-based management of genetic variation data.	Bioinformatics	2014
25262649	Utilizing ethnic-specific differences in minor allele frequency to recategorize reported pathogenic deafness variants.	Am J Hum Genet	2014
23280582	AudioGene: predicting hearing loss genotypes from phenotypes to guide genetic screening.	Hum Mutat	2013
23668349	Computational identification of operon-like transcriptional loci in eukaryotes.	Comput Biol Med	2013
23804846	Advancing genetic testing for deafness with genomic technology.	J Med Genet	2013
23508994	Prioritization of retinal disease genes: an integrative approach.	Hum Mutat	2013
23500522	Exon-level expression profiling of ocular tissues.	Exp Eye Res	2013
23536807	A genome-wide association study for primary open angle glaucoma and macular degeneration reveals novel Loci.	PLoS One	2013
22448124	Putative multifunctional signature of lung metastases in dedifferentiated chondrosarcoma.	Sarcoma	2012
23576921	Swarm rat chondrosarcoma cells as an in vivo model: lung colonization and effects of tissue environment on tumor growth.	Iowa Orthop J	2012
22975204	Prediction of cochlear implant performance by genetic mutation: the spiral ganglion hypothesis.	Hear Res	2012
22785243	Using the phenome and genome to improve genetic diagnosis for deafness.	Otolaryngol Head Neck Surg	2012
22770688	Informatics methods to enable sharing of quantitative imaging research data.	Magn Reson Imaging	2012
22842118	Coex-Rank: An approach incorporating co-expression information for combined analysis of microarray data.	J Integr Bioinform	2012
21356483	Image-based biomarkers in clinical practice.	Semin Radiat Oncol	2011
21520338	DFNA8/12 caused by TECTA mutations is the most identified subtype of nonsyndromic autosomal dominant hearing loss.	Hum Mutat	2011
20018933	Bioinformatic analysis of gene sets regulated by ligand-activated and dominant-negative peroxisome proliferator-activated receptor gamma in mouse aorta.	Arterioscler Thromb Vasc Biol	2010
20809981	Microenvironment alters epigenetic and gene expression profiles in Swarm rat chondrosarcoma tumors.	BMC Cancer	2010
20579359	Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes.	BMC Genomics	2010
20133870	Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis.	Proc Natl Acad Sci U S A	2010
19161137	Mutation in the COCH gene is associated with superior semicircular canal dehiscence.	Am J Med Genet A	2009
21841894	Multi-granularity Parallel Computing in a Genome-Scale Molecular Evolution Application.	J Supercomput	2009
19780026	A contemporary review of AudioGene audioprofiling: a machine-based candidate gene prediction tool for autosomal dominant nonsyndromic hearing loss.	Laryngoscope	2009
18647756	A knowledge-based approach to predict intragenic deletions or duplications.	Bioinformatics	2008
18941426	Audioprofile-directed screening identifies novel mutations in KCNQ4 causing hearing loss at the DFNA2 locus.	Genet Med	2008
18682555	Effects of colonization, luminescence, and autoinducer on host transcription during development of the squid-vibrio association.	Proc Natl Acad Sci U S A	2008
17190802	Eukaryotic operon-like transcription of functionally related genes in Drosophila.	Proc Natl Acad Sci U S A	2007
18172923	Transcript annotation prioritization and screening system (TrAPSS) for mutation screening.	J Bioinform Comput Biol	2007
17675665	New approaches to the treatment of dense deposit disease.	J Am Soc Nephrol	2007
17460291	IDOCS: intelligent distributed ontology consensus system--the use of machine learning in retinal drusen phenotyping.	Invest Ophthalmol Vis Sci	2007
16671097	Genome-wide identification of pseudogenes capable of disease-causing gene conversion.	Hum Mutat	2006
16780587	An annotated cDNA library of juvenile Euprymna scolopes with and without colonization by the symbiont Vibrio fischeri.	BMC Genomics	2006
16922687	First exons and introns--a survey of GC content and gene structure in the human genome.	In Silico Biol	2006
16887324	Analysis of ESTs from Lutzomyia longipalpis sand flies and their contribution toward understanding the insect-parasite relationship.	Genomics	2006
16983098	Regulation of gene expression in the mammalian eye and its relevance to eye disease.	Proc Natl Acad Sci U S A	2006
16912328	Integration site choice of a feline immunodeficiency virus vector.	J Virol	2006
16395665	Prioritizing regions of candidate genes for efficient mutation screening.	Hum Mutat	2006

1 - 50 of 84

Kathleen M Fisch

Center for Computational Biology and Bioinformatics, University of California

Career Start Year 2009

Number of shared co-authors 3

Karin S Kassahn

Adelaide Medical School, The University of Adelaide

Career Start Year 2007

Number of shared co-authors 2

Justin Paschall

National Human Genome Research Institute, National Institutes of Health

Career Start Year 2004

Number of shared co-authors 3

Jochen Hecht

The Barcelona Institute of Science and Technology

Career Start Year 2003

Number of shared co-authors 1

Erliang Zeng

College of Dentistry, University of Iowa

Career Start Year 2001

Number of shared co-authors 0

Razvan Sultana

John A. Burns School of Medicine, University of Hawaii at Manoa

Career Start Year 2001

Number of shared co-authors 28

J??rg Grigull

York University

Career Start Year 2000

Number of shared co-authors 0

Braden Boone

HudsonAlpha Institute for Biotechnology

Career Start Year 1999

Number of shared co-authors 3

Shawn Levy

HudsonAlpha Institute for Biotechnology

Career Start Year 1999

Number of shared co-authors 11

Sarah J Wheelan

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1998

Number of shared co-authors 3

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 0

Shannon K McWeeney

Oregon Health & Science University, University of California Berkeley

Career Start Year 1997

Number of shared co-authors 4

Wenzhong Xiao

Stanford University

Career Start Year 1997

Number of shared co-authors 1

Elizabeth A Worthey

Heersink School of Medicine, The University of Alabama at Birmingham

Career Start Year 1995

Number of shared co-authors 7

Jared C Roach

Institute for Systems Biology

Career Start Year 1995

Number of shared co-authors 11

Mark Yandell

University of Utah

Career Start Year 1994

Number of shared co-authors 23

Alejandro A Sch??ffer

National Cancer Institute, National Institutes of Health

Career Start Year 1993

Number of shared co-authors 1

Stanley F Nelson

university of california los angeles

Career Start Year 1993

Number of shared co-authors 13

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 12

Zugen Chen

David Geffen School of Medicine, University of California los angeles

Career Start Year 1992

Number of shared co-authors 1

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 28

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 1

Aleksandar Milosavljevic

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 22

Gustavo Glusman

Institute for Systems Biology

Career Start Year 1988

Number of shared co-authors 19

Eric S Lander

Vanderbilt-Ingram Cancer Center, Vanderbilt University

Career Start Year 1986

Number of shared co-authors 45

Jiannis Ragoussis

McGill University

Career Start Year 1986

Number of shared co-authors 7

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 10

Roderick V Jensen

Virginia Tech

Career Start Year 1985

Number of shared co-authors 2

James C Mullikin

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1985

Number of shared co-authors 20

Tatsuhiko Tsunoda

The University of Tokyo

Career Start Year 1984

Number of shared co-authors 7

row(s) 1 - 30 of 30

Todd E Scheetz

the University of Iowa Carver College of Medicine

Co-authored papers 48

Terry A Braun

University of Iowa

Co-authored papers 32

Val C Sheffield

Carver College of Medicine, University of Iowa

Co-authored papers 22

Edwin M Stone

Carver College of Medicine, University of Iowa, USA Institute for Vision Research

Co-authored papers 13

Adam P DeLuca

Institute for Vision Research, Carver College of Medicine, University of Iowa

Co-authored papers 12

Michael S Hildebrand

Co-authored papers 10

Kyle R Taylor

Washington State University College of Veterinary Medicine

Co-authored papers 8

Abbot F Clark

North Texas Eye Research Institute, University of North Texas Health Science Center

Co-authored papers 5

Anne E Kwitek

Medical College of Wisconsin

Co-authored papers 3

Alex H Wagner

Iowa State University, Mayo Clinic, Nationwide Children's Hospital, The Ohio State University College of Medicine, University of Iowa, Washington University in Saint Louis

Co-authored papers 3

Howard J Jacob

Genomics Research Center

Co-authored papers 3

Robert F Mullins

the University of Iowa Carver College of Medicine

Co-authored papers 3

A Jason Grundstad

Co-authored papers 3

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Co-authored papers 2