Author details

Full Name

Chad Nusbaum

Affiliation

ORCID

Career Start Year

1989

Papers

111

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37770633	Multitissue H3K27ac profiling of GTEx samples links epigenomic variation to disease.	Nat Genet	2023
33942720	Multiplexed mRNA assembly into ribonucleoprotein particles plays an operon-like role in the control of yeast cell physiology.	Elife	2021
33536627	Author Correction: A structural variation reference for medical and population genetics.	Nature	2021
32213704	Th17 reprogramming of T cells in systemic juvenile idiopathic arthritis.	JCI Insight	2020
31409923	Publisher Correction: The immune cell landscape in kidneys of patients with lupus nephritis.	Nat Immunol	2019
31211692	TGFÎ² signaling underlies hematopoietic dysfunction and bone marrow failure in Shwachman-Diamond Syndrome.	J Clin Invest	2019
31209404	The immune cell landscape in kidneys of patients with lupus nephritis.	Nat Immunol	2019
29093087	Early Epstein-Barr Virus Genomic Diversity and Convergence toward the B95.8 Genome in Primary Infection.	J Virol	2018
29996944	Methods for high-dimensional analysis of cells dissociated from cryopreserved synovial tissue	Arthritis Res Ther	2018
29535149	SvABA: genome-wide detection of structural variants and indels by local assembly.	Genome Res	2018
27540072	Genome Sequence of Spizellomyces punctatus.	Genome Announcements	2016
26968626	Use of the MS2 aptamer and coat protein for RNA localization in yeast: A response to "MS2 coat proteins bound to yeast mRNAs block 5' to 3' degradation and trap mRNA decay products: implications for the localization of mRNAs by MS2-MCP system".	RNA	2016
26899007	Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts.	Nat Commun	2016
27892853	Structure of the germline genome of <i>Tetrahymena thermophila</i> and relationship to the massively rearranged somatic genome.	Elife	2016
27826357	Systematic comparison of monoclonal versus polyclonal antibodies for mapping histone modifications by ChIP-seq.	Epigenetics Chromatin	2016
26543116	Draft Genome Sequence of Cercospora arachidicola, Causal Agent of Early Leaf Spot in Peanuts.	Genome Announcements	2015
25754775	Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species.	Current Genetics	2015
26091036	Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone.	Cell	2015
25992865	Cervicovaginal bacteria are a major modulator of host inflammatory responses in the female genital tract.	Immunity	2015
24689939	Rich and cold: diversity, distribution and drivers of fungal communities in patterned-ground ecosystems of the North American Arctic.	Mol Ecol	2014
25326702	Comprehensive variation discovery in single human genomes.	Nat Genet	2014
24816817	Massively parallel sequencing of human urinary exosome/microvesicle RNA reveals a predominance of non-coding RNA.	PLoS One	2014
25214632	Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak.	Science	2014
23718773	Characterizing and measuring bias in sequence data.	Genome Biol	2013
24157732	Semiconductor-based DNA sequencing of histone modification states.	Nat Commun	2013
23942320	The Capsaspora genome reveals a complex unicellular prehistory of animals.	Nat Commun	2013
24368732	Regulated aggregative multicellularity in a close unicellular relative of metazoa.	Elife	2013
23785293	Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica.	PLoS Genet	2013
23396133	Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing.	Nat Genet	2013
23419129	Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta.	Genome Biol	2013
22086920	Yeast sterol regulatory element-binding protein (SREBP) cleavage requires Cdc48 and Dsc5, a ubiquitin regulatory X domain-containing subunit of the Golgi Dsc E3 ligase.	J Biol Chem	2012
22800726	Paired-end sequencing of Fosmid libraries by Illumina.	Genome Res	2012
22531001	Genome-wide identification and characterization of replication origins by deep sequencing.	Genome Biol	2012
22829535	Finished bacterial genomes from shotgun sequence data.	Genome Res	2012
22455878	Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes.	Genome Biol	2012
22863213	Pacific biosciences sequencing technology for genotyping and variation discovery in human data.	BMC Genomics	2012
22315421	Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.	Proc Natl Acad Sci U S A	2012
22940246	A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals.	Mol Cell	2012
23479789	Reply to Guy et al.: Support for a bottleneck in the 2011 Escherichia coli O104:H4 outbreak in Germany.	Proc Natl Acad Sci U S A	2012
23270466	How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?	BMC Genomics	2012
21829618	High-resolution description of antibody heavy-chain repertoires in humans.	PLoS ONE	2011
21205303	A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries.	Genome Biol	2011
21338519	Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries.	Genome Biol	2011
21187386	High-quality draft assemblies of mammalian genomes from massively parallel sequence data.	Proc Natl Acad Sci U S A	2011
21183675	Complete genome sequence of Algoriphagus sp. PR1, bacterial prey of a colony-forming choanoflagellate.	J Bacteriol	2011
21516085	Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells.	Nat Biotechnol	2011
21511999	Comparative functional genomics of the fission yeasts.	Science	2011
21572440	Full-length transcriptome assembly from RNA-Seq data without a reference genome.	Nat Biotechnol	2011
21835008	Hybrid selection for sequencing pathogen genomes from clinical samples.	Genome Biol	2011
21993624	A high-resolution map of human evolutionary constraint using 29 mammals.	Nature	2011