Author details

Full Name

Seth Carbon

Affiliation

Lawrence Berkeley National Laboratory

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
38000386	The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genesÂ and diseases across species.	Nucleic Acids Res	2024
37953324	The Human Phenotype Ontology in 2024: phenotypes around the world.	Nucleic Acids Res	2024
36866529	The Gene Ontology knowledgebase in 2023.	Genetics	2023
37389415	KG-Hub-building and exchanging biological knowledge graphs.	Bioinformatics	2023
36208225	Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.	Database (Oxford)	2022
33196056	KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response.	Patterns (N Y)	2021
34710081	Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).	PLoS Comput Biol	2021
34697637	OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.	Database (Oxford)	2021
33964129	Reactome and the Gene Ontology: digital convergence of data resources.	Bioinformatics	2021
32839776	KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response.	bioRxiv	2020
32875947	Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns.	Open Biol	2020
30917137	An analysis and metric of reusable data licensing practices for biomedical resources.	PLoS One	2019
31548717	Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems.	Nat Genet	2019
29186578	The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.	Nucleic Acids Res	2018
27812941	Get GO! Retrieving GO Data Using AmiGO, QuickGO, API, Files, and Tools.	Methods Mol Biol	2017
27899636	The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.	Nucleic Acids Res	2017
27516611	Navigating the Phenotype Frontier: The Monarch Initiative.	Genetics	2016
24885854	A method for increasing expressivity of Gene Ontology annotations using a compositional approach.	BMC Bioinformatics	2014
25075290	BioJS: an open source standard for biological visualisation - its status in 2014.	F1000Res	2014
23161678	Gene Ontology annotations and resources.	Nucleic Acids Res	2013
22080565	modMine: flexible access to modENCODE data.	Nucleic Acids Res	2012
19033274	AmiGO: online access to ontology and annotation data.	Bioinformatics	2009

1 - 22 of 22

Dustin Olley

University of Maryland School of Medicine, Institute for Genome Sciences

Career Start Year 2019

Number of shared co-authors 12

Mark Thompson

Leiden University Medical Center

Career Start Year 2014

Number of shared co-authors 11

Aravind Venkatesan

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2010

Number of shared co-authors 1

James Malone

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 44

Simon Jupp

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 40

Alejandra Gonzalez-Beltran

Oxford e-Research Centre, University of Oxford

Career Start Year 2009

Number of shared co-authors 29

Robert Hoehndorf

King Abdullah University of Science and Technology

Career Start Year 2006

Number of shared co-authors 25

Wenjin Jim Zheng

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 5

Dietrich Rebholz-Schuhmann

University of Cologne

Career Start Year 2003

Number of shared co-authors 9

Chunlei Wu

The Scripps Research Institute

Career Start Year 2002

Number of shared co-authors 15

Andrew I Su

The Scripps Research Institute

Career Start Year 2001

Number of shared co-authors 15

Tony Burdett

European Bioinformatics Institute

Career Start Year 2000

Number of shared co-authors 25

Marco Roos

Leiden University Medical Center

Career Start Year 1999

Number of shared co-authors 23

Karen Eilbeck

University of Utah

Career Start Year 1999

Number of shared co-authors 61

Philippe Rocca-Serra

University of Oxford

Career Start Year 1998

Number of shared co-authors 52

Cecilia N Arighi

University of Delaware

Career Start Year 1998

Number of shared co-authors 75

Andra Waagmeester

Maastricht University

Career Start Year 1998

Number of shared co-authors 10

Robert Stevens

The University of Manchester

Career Start Year 1998

Number of shared co-authors 8

Fabien Campagne

Weill Cornell Medical College

Career Start Year 1998

Number of shared co-authors 0

Michel Dumontier

Institute of Data Science, Maastricht University

Career Start Year 1998

Number of shared co-authors 54

Alexander R Pico

Institute of Data Science and Biotechnology, Gladstone Institutes

Career Start Year 1998

Number of shared co-authors 11

Susanna-Assunta Sansone

Oxford e-Research Centre, University of Oxford

Career Start Year 1997

Number of shared co-authors 57

Helen Parkinson

European Bioinformatics Institute

Career Start Year 1997

Number of shared co-authors 71

Katherine Wolstencroft

Leiden Institute of Advanced Computer Science, Leiden University

Career Start Year 1997

Number of shared co-authors 14

Lawrence E Hunter

University of Colorado School of Medicine

Career Start Year 1993

Number of shared co-authors 7

Carole Goble

University of Manchester

Career Start Year 1993

Number of shared co-authors 30

Mark D Wilkinson

Universidad Politecnica de Madrid (UPM)

Career Start Year 1993

Number of shared co-authors 11

Kei-Hoi Cheung

Yale University School of Medicine

Career Start Year 1992

Number of shared co-authors 6

Phillip Lord

Newcastle University

Career Start Year 1991

Number of shared co-authors 17

Martin Kuiper

Norwegian University of Science and Technology

Career Start Year 1983

Number of shared co-authors 21

row(s) 1 - 30 of 30

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 17

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 9

James P Balhoff

Renaissance Computing Institute, University of North Carolina

Co-authored papers 9

Nomi L Harris

Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University

Co-authored papers 8

Suzanna E Lewis

Lawrence Berkeley National Laboratory

Co-authored papers 8

Melissa A Haendel

Co-authored papers 7