Author details

Full Name

Joseph B Hiatt

Affiliation

Fred Hutchinson Cancer Center

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36697405	Author Correction: A framework for clinical cancer subtyping from nucleosome profiling of cell-free DNA.	Nat Commun	2023
35332335	Publisher Correction: Evolution of enhanced innate immune evasion by SARS-CoV-2.	Nature	2022
35843737	Improving the efficacy of immunotherapy in small cell lung cancer: Leveraging recent scientific discoveries and tumor-specific antigens.	Semin Oncol	2022
35365639	A functional map of HIV-host interactions in primary human T cells.	Nat Commun	2022
36463275	A framework for clinical cancer subtyping from nucleosome profiling of cell-free DNA.	Nat Commun	2022
35920742	Inhibition of LSD1 with Bomedemstat Sensitizes Small Cell Lung Cancer to Immune Checkpoint Blockade and T-Cell Killing.	Clin Cancer Res	2022
34942634	Evolution of enhanced innate immune evasion by SARS-CoV-2.	Nature	2022
33351785	TCF-1 regulates HIV-specific CD8+ T cell expansion capacity.	JCI Insight	2021
34127972	Evolution of enhanced innate immune evasion by the SARS-CoV-2 B.1.1.7 UK variant.	bioRxiv	2021
33465157	Relationship between CD4 T cell turnover, cellular differentiation and HIV persistence during ART.	PLoS Pathog	2021
32511497	Test performance evaluation of SARS-CoV-2 serological assays.	medRxiv	2020
33060197	Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.	Science	2020
32855547	Evaluation of SARS-CoV-2 serology assays reveals a range of test performance.	Nat Biotechnol	2020
32645325	The Global Phosphorylation Landscape of SARS-CoV-2 Infection.	Cell	2020
32187548	Cyclophilin A Prevents HIV-1 Restriction in Lymphocytes by Blocking Human TRIM5Î± Binding to the Viral Core.	Cell Rep	2020
32470392	MAX Functions as a Tumor Suppressor and Rewires Metabolism in Small Cell Lung Cancer.	Cancer Cell	2020
32353859	A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.	Nature	2020
30559373	CRISPR-Cas9 genome engineering of primary CD4<sup>+</sup> T cells for the interrogation of HIV-host factor interactions.	Nat Protoc	2019
31359007	Large dataset enables prediction of repair after CRISPR-Cas9 editing in primary T cells.	Nat Biotechnol	2019
31043412	Delivering a STINGing Blow to Small Cell Lung Cancer via Synergistic Inhibition of DNA-Damage Response and Immune-Checkpoint Pathways.	Cancer Discov	2019
30271925	Light-activated cell identification and sorting (LACIS) for selection of edited clones on a nanofluidic device.	Commun Biol	2018
30166453	CRL4<sup>AMBRA1</sup> targets Elongin C for ubiquitination and degradation to modulate CRL5 signaling.	EMBO J	2018
29995861	Reprogramming human T cell function and specificity with non-viral genome targeting.	Nature	2018
30153309	Select gp120 V2 domain specific antibodies derived from HIV and SIV infection and vaccination inhibit gp120 binding to Î±4Î²7.	PLoS Pathog	2018
29875402	MAdCAM costimulation through Integrin-Î±4Î²7 promotes HIV replication.	Mucosal Immunol	2018
30170630	Fatal enteric plexus neuropathy after one dose of ipilimumab plus nivolumab: a case report.	J Immunother Cancer	2018
25722288	PI3K/AKT pathway mutations cause a spectrum of brain malformations from megalencephaly to focal cortical dysplasia.	Brain	2015
25608559	Deep sequencing of multiple regions of glial tumors reveals spatial heterogeneity for mutations in clinically relevant genes.	Genome Biol	2014
25419708	Targeting Î±4Î²7 integrin reduces mucosal transmission of simian immunodeficiency virus and protects gut-associated lymphoid tissue from infection.	Nat Med	2014
25418537	Recurrent de novo mutations implicate novel genes underlying simplex autism risk.	Nat Commun	2014
23523075	Mammalian X upregulation is associated with enhanced transcription initiation, RNA half-life, and MOF-mediated H4K16 acetylation.	Dev Cell	2013
24162774	The HIV-1 envelope protein gp120 impairs B cell proliferation by inducing TGF-Î²1 production and FcRL4 expression.	Nat Immunol	2013
23870653	Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.	Gigascience	2013
23925245	The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line.	Nature	2013
23382536	Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation.	Genome Res	2013
23509263	Activity-enhancing mutations in an E3 ubiquitin ligase identified by high-throughput mutagenesis.	Proc Natl Acad Sci U S A	2013
22371081	Massively parallel functional dissection of mammalian enhancers in vivo.	Nat Biotechnol	2012
23160955	Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.	Science	2012
23112150	Capturing native long-range contiguity by in situ library construction and optical sequencing.	Proc Natl Acad Sci U S A	2012
23142080	Transcriptome-wide miR-155 binding map reveals widespread noncanonical microRNA targeting.	Mol Cell	2012
22853953	Detection of ultra-rare mutations by next-generation sequencing.	Proc Natl Acad Sci U S A	2012
21170042	Haplotype-resolved genome sequencing of a Gujarati Indian individual.	Nat Biotechnol	2011
22019781	Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster.	Nat Genet	2011
20081835	Parallel, tag-directed assembly of locally derived short sequence reads.	Nat Methods	2010
19417902	Automated microfluidic chromatin immunoprecipitation from 2,000 cells.	Lab Chip	2009
19933330	The integrin alpha4beta7 forms a complex with cell-surface CD4 and defines a T-cell subset that is highly susceptible to infection by HIV-1.	Proc Natl Acad Sci U S A	2009

1 - 46 of 46

Jacob Pfeil

UC Santa Cruz Genomics Institute

Career Start Year 2015

Number of shared co-authors 4

Tao Wang

University of Texas Southwestern Medical Center

Career Start Year 2014

Number of shared co-authors 1

Tuo Zhang

Weill Cornell Medical College.

Career Start Year 2013

Number of shared co-authors 3

Marta Gut

Universitat de Barcelona (UB)

Career Start Year 2010

Number of shared co-authors 12

Raul Rabadan

Columbia University Vagelos College of Physicians and Surgeons

Career Start Year 2006

Number of shared co-authors 5

Yue Lu

The University of Texas MD Anderson Cancer Center

Career Start Year 2006

Number of shared co-authors 1

Ryan A Flynn

Boston Children's Hospital

Career Start Year 2006

Number of shared co-authors 10

Christoph Bock

CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences

Career Start Year 2005

Number of shared co-authors 5

Kun Qu

University of Science and Technology of China

Career Start Year 2005

Number of shared co-authors 3

Alex K Shalek

Institute for Medical Engineering & Science, Massachusetts Institute of Technology

Career Start Year 2005

Number of shared co-authors 11

Catrina Fronick

McDonnell Genome Institute, Washington University in St. Louis School of Medicine

Career Start Year 2004

Number of shared co-authors 12

Robert Sebra

Icahn School of Medicine at Mount Sinai

Career Start Year 2004

Number of shared co-authors 12

Agnes C Paquet

Universite Cote d'Azur, CNRS UMR5

Career Start Year 2004

Number of shared co-authors 2

Laura Riva

Sanford Burnham Prebys Medical Discovery Institute

Career Start Year 2003

Number of shared co-authors 13

Andrew V Kossenkov

The Wistar Institute

Career Start Year 2003

Number of shared co-authors 4

Xiaolin Wu

Leidos Biomedical Research Inc.

Career Start Year 2003

Number of shared co-authors 3

Olivier Elemento

Meyer Cancer Center

Career Start Year 2002

Number of shared co-authors 5

Sophia Derdak

Medical University of Vienna

Career Start Year 2001

Number of shared co-authors 1

Ludmila Danilova

Bloomberg-Kimmel Immunotherapy Institute, Johns Hopkins University School of Medicine

Career Start Year 2001

Number of shared co-authors 2

Vladimir Makarov

Center for Immunotherapy and Precision-Immuno-Oncology, Cleveland Clinic

Career Start Year 2001

Number of shared co-authors 7

Jason F Kreisberg

University of California San Diego

Career Start Year 2000

Number of shared co-authors 19

Sarah J Wheelan

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1998

Number of shared co-authors 9

Martin Hirst

University of British Columbia

Career Start Year 1998

Number of shared co-authors 10

Lianbo Yu

The Ohio State University

Career Start Year 1997

Number of shared co-authors 0

Robert A Holt

BC Cancer Research Institute

Career Start Year 1996

Number of shared co-authors 15

David E Root

Broad Institute of Harvard and MIT

Career Start Year 1993

Number of shared co-authors 4

Marco A Marra

University of British Columbia

Career Start Year 1993

Number of shared co-authors 26

Nir Hacohen

Broad Institute of MIT and Harvard

Career Start Year 1989

Number of shared co-authors 18

Elaine R Mardis

The Ohio State University

Career Start Year 1988

Number of shared co-authors 24

Richard H Scheuermann

J. Craig Venter Institute

Career Start Year 1983

Number of shared co-authors 8

row(s) 1 - 30 of 30

Jay Shendure

University of Washington

Co-authored papers 15

Nevan J Krogan (CM4AI)

University of California San Francisco

Co-authored papers 13

Alexander Marson

Gladstone-UCSF Institute of Genomic Immunology

Co-authored papers 9

Theodore L Roth

Stanford University

Co-authored papers 8

Mehdi Bouhaddou

J. David Gladstone Institutes

Co-authored papers 7

Danish Memon

European Bioinformatics Institute

Co-authored papers 6

Pedro Beltrao

Institute of Molecular Systems Biology, ETH Zurich

Co-authored papers 6

Adolfo Garc??a-Sastre

Icahn School of Medicine at Mount Sinai

Co-authored papers 6

Danielle L Swaney

J. David Gladstone Institutes

Co-authored papers 6

Margaret Soucheray

J. David Gladstone Institutes

Co-authored papers 6

Kirsten Obernier (CM4AI)

University of California San Francisco

Co-authored papers 6

Jyoti Batra

J. David Gladstone Institutes

Co-authored papers 6

Kevan M Shokat

University of California San Francisco

Co-authored papers 6

Hannes Braberg

University of California San Francisco

Co-authored papers 5

Natalia Jura

Cardiovascular Research Institute, University of California San Francisco

Co-authored papers 5

Ujjwal Rathore

University of California san francisco

Co-authored papers 5

Kliment A Verba

University of California, University of California San Francisco

Co-authored papers 5

Alicia L Richards

University of Wisconsin-Madison

Co-authored papers 5

Kris M White

Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)

Co-authored papers 5

Judd F Hultquist

Northwestern University Feinberg School of Medicine

Co-authored papers 5

David E Gordon

Emory University

Co-authored papers 4

Andrew Adey

Knight Cancer Institute, Oregon Health and Science University

Co-authored papers 4

Manisha Ummadi

University of California, San Francisco

Co-authored papers 4

Michael J McGregor

J. David Gladstone Institutes

Co-authored papers 4

Gwendolyn M Jang

Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes

Co-authored papers 4

Ruth H??ttenhain

Quantitative Biosciences Institute (QBI), University of California san francisco

Co-authored papers 4

Evan E Eichler

University of Washington

Co-authored papers 3

Mahdad Noursadeghi

University College London

Co-authored papers 3

Aashish Manglik

Department of Pharmaceutical Chemistry, University of California San Francisco

Co-authored papers 3

Eric Shifrut

Gladstone-UCSF Institute of Genomic Immunology

Co-authored papers 3

1 - 30

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