Author details

Full Name

Melissa S Cline

Affiliation

Genomics Institute, University of California Santa Cruz

ORCID

Career Start Year

1997

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37953330	The UCSC Genome Browser database: 2024 update.	Nucleic Acids Res	2024
36451272	Modeling the impact of data sharing on variant classification.	J Am Med Inform Assoc	2023
35072136	GA4GH: International policies and standards for data sharing across genomic research and healthcare.	Cell Genom	2021
35128509	International federation of genomic medicine databases using GA4GH standards.	Cell Genom	2021
31294896	Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants.	Hum Mutat	2019
30586411	BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2.	PLoS Genet	2018
27896972	DATA SHARING AND REPRODUCIBLE CLINICAL GENETIC TESTING: SUCCESSES AND CHALLENGES.	Pac Symp Biocomput	2017
28398314	Toil enables reproducible, open source, big biomedical data analyses.	Nat Biotechnol	2017
28782058	Consistency of <i>BRCA1</i> and <i>BRCA2</i> Variant Classifications Among Clinical Diagnostic Laboratories.	JCO Precis Oncol	2017
28544481	Matching phenotypes to whole genomes: Lessons learned from four iterations of the personal genome project community challenges.	Hum Mutat	2017
25392408	The UCSC Cancer Genomics Browser: update 2015.	Nucleic Acids Res	2015
25805167	Human genetics special issue on computational molecular medicine.	Hum Genet	2015
24270787	The UCSC Genome Browser database: 2014 update.	Nucleic Acids Res	2014
25409824	A comparative encyclopedia of DNA elements in the mouse genome.	Nature	2014
25267794	The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data.	Database (Oxford)	2014
24829458	RBPmap: a web server for mapping binding sites of RNA-binding proteins.	Nucleic Acids Res	2014
23155063	The UCSC Genome Browser database: extensions and updates 2013.	Nucleic Acids Res	2013
24084870	Exploring TCGA Pan-Cancer data at the UCSC Cancer Genomics Browser.	Sci Rep	2013
23929620	Splicing biomarkers of disease severity in myotonic dystrophy.	Ann Neurol	2013
23525800	Quaking and PTB control overlapping splicing regulatory networks during muscle cell differentiation.	RNA	2013
23300487	Rbfox1 downregulation and altered calpain 3 splicing by FRG1 in a mouse model of Facioscapulohumeral muscular dystrophy (FSHD).	PLoS Genet	2013
23109555	The UCSC Cancer Genomics Browser: update 2013.	Nucleic Acids Res	2013
22075998	ENCODE whole-genome data in the UCSC Genome Browser: update 2012.	Nucleic Acids Res	2012
22889292	An encyclopedia of mouse DNA elements (Mouse ENCODE).	Genome Biol	2012
22884328	Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy.	Neuron	2012
22086951	The UCSC Genome Browser database: extensions and updates 2011.	Nucleic Acids Res	2012
20959295	The UCSC Genome Browser database: update 2011.	Nucleic Acids Res	2011
21037257	ENCODE whole-genome data in the UCSC genome browser (2011 update).	Nucleic Acids Res	2011
21159622	Using bioinformatics to predict the functional impact of SNVs.	Bioinformatics	2011
20098426	Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy.	Nat Struct Mol Biol	2010
20498046	Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation.	Proc Natl Acad Sci U S A	2010
19204697	Understanding genome browsing.	Nat Biotechnol	2009
19570805	Affy exon tissues: exon levels in normal tissues in human, mouse and rat.	Bioinformatics	2009
18710874	Integrating expression data with domain interaction networks.	Bioinformatics	2008
20134061	Integrative visual analysis of the effects of alternative splicing on protein domain interaction networks.	J Integr Bioinform	2008
18819078	Exploring biological networks with Cytoscape software.	Curr Protoc Bioinformatics	2008
17127678	GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring.	Bioinformatics	2007
17947979	Integration of biological networks and gene expression data using Cytoscape.	Nat Protoc	2007
16424921	Unusual intron conservation near tissue-regulated exons found by splicing microarrays.	PLoS Comput Biol	2006
15961447	ANOSVA: a statistical method for detecting splice variation from expression data.	Bioinformatics	2005
16041372	Nova regulates brain-specific splicing to shape the synapse.	Nat Genet	2005
15103615	Evaluation of local structure alphabets based on residue burial.	Proteins	2004
15468759	A knowledge-based clustering algorithm driven by Gene Ontology.	J Biopharm Stat	2004
14962933	NetAffx Gene Ontology Mining Tool: a visual approach for microarray data analysis.	Bioinformatics	2004
14992489	The effects of alternative splicing on transmembrane proteins in the mouse genome.	Pac Symp Biocomput	2004
12519953	NetAffx: Affymetrix probesets and annotations.	Nucleic Acids Res	2003
15290774	Exploring alternative transcript structure in the human genome using blocks and InterPro.	J Bioinform Comput Biol	2003
12651732	GPCR-GRAPA-LIB--a refined library of hidden Markov Models for annotating GPCRs.	Bioinformatics	2003
12784210	Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.	Proteins	2003
12855476	Gene structure-based splice variant deconvolution using a microarray platform.	Bioinformatics	2003

1 - 50 of 57

Vladimir Vacic

Stanley Institute for Cognitive Genomics

Career Start Year 2005

Number of shared co-authors 1

Quaid Morris

Sloan Kettering Institute

Career Start Year 2003

Number of shared co-authors 10

Chunlei Wu

The Scripps Research Institute

Career Start Year 2002

Number of shared co-authors 9

Haiyuan Yu

Weill Institute for Cell and Molecular Biology, Cornell University

Career Start Year 2001

Number of shared co-authors 5

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 6

Maricel G Kann

University of Maryland

Career Start Year 2000

Number of shared co-authors 10

Quang M Trinh

Ontario Institute for Cancer Research

Career Start Year 1999

Number of shared co-authors 6

Vineet Bafna

University of California San Diego

Career Start Year 1998

Number of shared co-authors 15

Fabien Campagne

Weill Cornell Medical College

Career Start Year 1998

Number of shared co-authors 1

Yan Cui

University of Tennessee Health Science Center

Career Start Year 1998

Number of shared co-authors 0

Frederick P Roth

University of Toronto

Career Start Year 1998

Number of shared co-authors 15

Sarah J Wheelan

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1998

Number of shared co-authors 7

Laura Elnitski

National Human Genome Research Institute

Career Start Year 1997

Number of shared co-authors 27

Panayiotis V Benos

University of Florida

Career Start Year 1996

Number of shared co-authors 9

Steven J M Jones

University of British Columbia

Career Start Year 1995

Number of shared co-authors 49

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 6

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 7

Mark Yandell

University of Utah

Career Start Year 1994

Number of shared co-authors 26

Sandro J de Souza

Universidade Federal do Rio Grande do Norte

Career Start Year 1992

Number of shared co-authors 8

Zhiping Weng

University of Massachusetts Medical School

Career Start Year 1992

Number of shared co-authors 46

Jill P Mesirov

University of California San Diego

Career Start Year 1992

Number of shared co-authors 25

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 64

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 4

Jean-Pierre A Kocher

Mayo Clinic

Career Start Year 1991

Number of shared co-authors 2

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 18

Samuel Levy

Bluestar Genomics Inc.

Career Start Year 1991

Number of shared co-authors 9

Aleksandar Milosavljevic

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 49

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 9

Gustavo Glusman

Institute for Systems Biology

Career Start Year 1988

Number of shared co-authors 27

James C Mullikin

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1985

Number of shared co-authors 44

row(s) 1 - 30 of 30

David Haussler

Genomics Institute, University of California Santa Cruz

Co-authored papers 19

Mark Diekhans

Genomics Institute, University of California Santa Cruz

Co-authored papers 11

William James Kent

Co-authored papers 10

Mary Goldman

UC Santa Cruz Genomics Institute, University of California

Co-authored papers 9

Kate R Rosenbloom

Co-authored papers 9

Katrina Learned

Co-authored papers 8

David Kulp

Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard

Co-authored papers 7

Ann S Zweig

Co-authored papers 6

Angie S Hinrichs

Co-authored papers 6

Galt P Barber

Genomics Institute, University of California Santa Cruz

Co-authored papers 6

Venkat S Malladi

UT Southwestern Medical Center

Co-authored papers 6

Rachel Karchin

Johns Hopkins University

Co-authored papers 6

Brooke Rhead

Co-authored papers 6

Hiram Clawson

Co-authored papers 6

Brian Craft

UC Santa Cruz Genomics Institute, University of California

Co-authored papers 6

Robert M Kuhn

Genomics Institute, University of California Santa Cruz

Co-authored papers 6

Donna Karolchik

Co-authored papers 6

Rachel A Harte

Co-authored papers 5

Jingchun Zhu

University of California at Santa Cruz

Co-authored papers 4

Benedict Paten

UC Santa Cruz Genomics Institute, University of California

Co-authored papers 4

Jill Cheng

Co-authored papers 4

Kayla E Smith

Co-authored papers 3

Maximilian Haeussler

Genomics Institute, University of California Santa Cruz

Co-authored papers 3

Roderic Guig??

Barcelona Institute of Science and Technology

Co-authored papers 3

Belinda Giardine

Co-authored papers 3

Adrian Thorogood

Terry Fox Research Institute.

Co-authored papers 3

Peter Goodhand

Ontario Institute for Cancer Research

Co-authored papers 3

Amanda B Spurdle

QIMR Berghofer Medical Research Institute

Co-authored papers 3

Brian T Lee

Genomics Institute, University of California Santa Cruz

Co-authored papers 3

Teresa Swatloski

University of California

Co-authored papers 3

1 - 30

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