Author details

Full Name

Peter Dawyndt

Affiliation

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37459443	Unipept Desktop 2.0: Construction of Targeted Reference Protein Databases for Metaproteogenomics Analyses.		2023
34390575	Unipept Visualizations: an interactive visualization library for biological data.		2022
35643462	FragGeneScanRs: faster gene prediction for short reads.	BMC Bioinformatics	2022
35689184	UMGAP: the Unipept MetaGenomics Analysis Pipeline.	BMC Genomics	2022
33401902	Unipept Desktop: A Faster, More Powerful Metaproteomics Results Analysis Tool.	Journal of Proteome Research	2021
33135964	Chitin in Strawberry Cultivation: Foliar Growth and Defense Response Promotion, but Reduced Fruit Yield and Disease Resistance by Nutrient Imbalances.	Molecular Plant-Microbe Interactions	2021
32492134	Unipept CLI 2.0: adding support for visualizations and functional annotations.		2020
32431147	Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for Seamless End-to-End Metaproteomics Data Analysis.	Journal of Proteome Research	2020
31506264	Introducing SPeDE: High-Throughput Dereplication and Accurate Determination of Microbial Diversity from Matrix-Assisted Laser Desorption-Ionization Time of Flight Mass Spectrometry Data.	mSystems	2019
30465426	Unipept 4.0: Functional Analysis of Metaproteome Data.	Journal of Proteome Research	2019
31289280	Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome.	Scientific Reports	2019
31236842	A Method for Comprehensive Proteomic Analysis of Human Faecal Samples to Investigate Gut Dysbiosis in Patients with Cystic Fibrosis.	Adv Exp Med Biol	2019
30367037	Multifunctional sequence-defined macromolecules for chemical data storage.	Nat Commun	2018
28552653	High-throughput metaproteomics data analysis with Unipept: A tutorial.	J Proteomics	2018
28562015	Temporal Dynamics of Bacterial and Fungal Colonization on Plastic Debris in the North Sea.	Environmental Science & Technology	2017
28066380	Dynamics in the Strawberry Rhizosphere Microbiome in Response to Biochar and Leaf Infection.	Frontiers in Microbiology	2016
27384223	Global alternans instability and its effect on non-linear wave propagation: dynamical Wenckebach block and self terminating spiral waves.	Scientific Reports	2016
27380722	The unique peptidome: Taxon-specific tryptic peptides as biomarkers for targeted metaproteomics.	Proteomics	2016
26819472	Unipept web services for metaproteomics analysis.	Bioinformatics	2016
26330184	Faecal proteomics: A tool to investigate dysbiosis and inflammation in patients with cystic fibrosis.	J Cyst Fibros	2016
26204244	Bacterial Community Profiling of Plastic Litter in the Belgian Part of the North Sea.	Environmental Science & Technology	2015
25477242	The Unipept metaproteomics analysis pipeline.	Proteomics	2015
25971785	A Long Fragment Aligner called ALFALFA.	BMC Bioinformatics	2015
25093819	Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.	PLoS Biol	2014
24321274	StrainInfo introduces electronic passports for microorganisms.	Systematic and Applied Microbiology	2014
25217650	Small size ionic heterogeneities in the human heart can attract rotors.	American Journal of Physiology - Heart and Circulatory Physiology	2014
25197446	Genomic standards consortium projects.	Stand Genomic Sci	2014
23349213	essaMEM: finding maximal exact matches using enhanced sparse suffix arrays.		2013
24161830	Filtering and ranking techniques for automated selection of high-quality 16S rRNA gene sequences.	Systematic and Applied Microbiology	2013
24260262	Action potential duration heterogeneity of cardiac tissue can be evaluated from cell properties using Gaussian Green's function approach.	PLoS ONE	2013
24483482	Initiation and dynamics of a spiral wave around an ionic heterogeneity in a model for human cardiac tissue.		2013
23451293	RCN4GSC Workshop Report: Modeling a Testbed for Managing Data at the Interface of Biodiversity and (Meta)Genomics, April 2011.	Stand Genomic Sci	2012
22584621	Prospects and limitations of full-text index structures in genome analysis.	Nucleic Acids Research	2012
23153116	Unipept: tryptic peptide-based biodiversity analysis of metaproteome samples.	J Proteome Res	2012
23409219	RCN4GSC Meeting Report: Initiating a Testbed for Managing Data at the Interface of Biodiversity and Genomics/Metagenomics, May 2011.	Stand Genomic Sci	2012
21552244	Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.	Nat Biotechnol	2011
21257278	Classification and identification of the Burkholderia cepacia complex: Past, present and future.	Systematic and Applied Microbiology	2011
21514082	Make Histri: reconstructing the exchange history of bacterial and archaeal type strains.	Systematic and Applied Microbiology	2011
21677865	Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets.	Stand Genomic Sci	2011
21713030	The Genomic Standards Consortium.	PLoS Biol	2011
20113515	From learning taxonomies to phylogenetic learning: integration of 16S rRNA gene data into FAME-based bacterial classification.	BMC Bioinformatics	2010
20211251	Microbiological Common Language (MCL): a standard for electronic information exchange in the Microbial Commons.	Res Microbiol	2010
19237256	Towards large-scale FAME-based bacterial species identification using machine learning techniques.	Systematic and Applied Microbiology	2009
19029547	Bayesian clustering of fuzzy feature vectors using a quasi-likelihood approach.	IEEE Trans Pattern Anal Mach Intell	2009
18175710	Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium).	International Journal of Systematic and Evolutionary Microbiology	2008
18036180	Ecological diversification in the Bacillus cereus Group.	Environmental Microbiology	2008
18627778	Matrix-assisted laser desorption ionisation-time-of of-flight mass spectrometry of intact cells allows rapid identification of Burkholderia cepacia complex.	J Microbiol Methods	2008
18479205	Laying the foundation for a Genomic Rosetta Stone: creating information hubs through the use of consensus identifiers.	OMICS	2008
18564915	Meeting report: the fifth Genomic Standards Consortium (GSC) workshop.	OMICS	2008
18564914	Meeting report: the fourth Genomic Standards Consortium (GSC) workshop.	OMICS	2008