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Author Details

Stephanie I Fraley
University of California San Diego
2010
32
17
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37425829Divergent iron-regulatory states contribute to heterogeneity in breast cancer aggressiveness.bioRxiv2024
36463416Mechanisms underlying divergent relationships between Ca<sup>2+</sup> and YAP/TAZ signalling.J Physiol2023
37662290A simple solid media assay for detection of synergy between bacteriophages and antibiotics.bioRxiv2023
37986859Universal Digital High Resolution Melt for the detection of pulmonary mold infections.bioRxiv2023
37778538A broad-based probe-free qPCR assay for detection and discrimination of three human herpes viruses.J Virol Methods2023
37732245Universal digital high resolution melt analysis for the diagnosis of bacteremia.medRxiv2023
37321214Adhesion tunes speed and persistence by coordinating protrusions and extracellular matrix remodeling.Dev Cell2023
35771928Can rubrics combat gender bias in faculty hiring?Science2022
33355665Data-driven noise modeling of digital DNA melting analysis enables prediction of sequence discriminating power.Bioinformatics2021
34591613Interpretation of cancer mutations using a multiscale map of protein systems.Science2021
33990464A spatial model of YAP/TAZ signaling reveals how stiffness, dimensionality, and shape contribute to emergent outcomes.Proc Natl Acad Sci U S A2021
34095869A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells.STAR Protoc2021
32295887Improving Quantitative Power in Digital PCR through Digital High-Resolution Melting.J Clin Microbiol2020
33490901Phenotypically supervised single-cell sequencing parses within-cell-type heterogeneity.iScience2020
31857292Cell Adhesiveness Serves as a Biophysical Marker for Metastatic Potential.Cancer Res2020
30515503Macromolecular crowding tunes 3D collagen architecture and cell morphogenesis.Biomater Sci2019
31176842Emerging themes and unifying concepts underlying cell behavior regulation by the pericellular space.Acta Biomater2019
312513303D collagen architecture regulates cell adhesion through degradability, thereby controlling metabolic and oxidative stress.Integr Biol (Camb)2019
29652558A High-Resolution Digital DNA Melting Platform for Robust Sequence Profiling and Enhanced Genotype Discrimination.SLAS Technol2018
29610481A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.Nat Genet2018
29490932Emerging Technologies for Molecular Diagnosis of Sepsis.Clin Microbiol Rev2018
291627973D collagen architecture induces a conserved migratory and transcriptional response linked to vasculogenic mimicry.Nat Commun2017
28176860Massively parallel digital high resolution melt for rapid and absolutely quantitative sequence profiling.Sci Rep2017
26778280Nested Machine Learning Facilitates Increased Sequence Content for Large-Scale Automated High Resolution Melt Genotyping.Sci Rep2016
26476457Universal digital high-resolution melt: a novel approach to broad-based profiling of heterogeneous biological samples.Nucleic Acids Res2016
26423227Three-dimensional matrix fiber alignment modulates cell migration and MT1-MMP utility by spatially and temporally directing protrusions.Sci Rep2015
25275518Trainable high resolution melt curve machine learning classifier for large-scale reliable genotyping of sequence variants.PLoS One2014
23618955A physical sciences network characterization of non-tumorigenic and metastatic cells.Sci Rep2013
22395610Dimensional and temporal controls of three-dimensional cell migration by zyxin and binding partners.Nat Commun2012
22761335NAC1 is an actin-binding protein that is essential for effective cytokinesis in cancer cells.Cancer Res2012
21911388Hypoxia-inducible factor 1 is a master regulator of breast cancer metastatic niche formation.Proc Natl Acad Sci U S A2011
20473295A distinctive role for focal adhesion proteins in three-dimensional cell motility.Nat Cell Biol2010
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Collaborators

Denis Wirtz
Johns Hopkins University
Co-authored papers 6
Hannah Carter
University of California San Diego
Co-authored papers 5
Kevin Chen
University of California
Co-authored papers 5
Daniel Ortiz Velez
University of California San Diego
Co-authored papers 5
Aditya Kumar
Rice University, University of California San Diego
Co-authored papers 3
Adam J Engler
University of California
Co-authored papers 3
Todd P Coleman
University of California San Diego
Co-authored papers 3
Sural K Ranamukhaarachchi
University of California San Diego Jacobs School of Engineering
Co-authored papers 3
Rishi N Modi
University of California
Co-authored papers 2
Kivilcim Ozturk
Department of Pharmaceutical Technology, Faculty of Pharmacy, Hacettepe University
Co-authored papers 2
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 2
Ali Khalilimeybodi
University of Virginia
Co-authored papers 2
Richard E Rothman
Johns Hopkins University School of Medicine
Co-authored papers 2
Charlotte A Gaydos
Johns Hopkins University
Co-authored papers 2
Katherine Licon
University of California San Diego
Co-authored papers 2
Jason F Kreisberg
University of California San Diego
Co-authored papers 2
Michael Ku Yu
University of California San Diego
Co-authored papers 2
Kyle S Sanchez
University of California San Diego
Co-authored papers 1
Katrina M Olson
University of California
Co-authored papers 1
Emma K Farley
University of California
Co-authored papers 1
Fan Zheng
University of California San Diego
Co-authored papers 1
Erica Silva
University of California San Diego
Co-authored papers 1
Tyler Jacks
Co-authored papers 1
Guorong Xu
Chinese University of Hong Kong
Co-authored papers 1
Esther W Lim
University of California San Diego
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
Yu-Hsiang Hsieh
Johns Hopkins University School of Medicine
Co-authored papers 1
John Lee
University of California San Diego
Co-authored papers 1
Dexter Pratt (CM4AI)
UC San Diego
Co-authored papers 1
Jisoo Park
University of California San Diego san francisco
Co-authored papers 1
Release 1.2