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Author Details

Genevera I Allen
Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital
2010
40
16
Timothy Clark (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36865102SPA-STOCSY: An Automated Tool for Identification of Annotated and Non-Annotated Metabolites in High-Throughput NMR Spectra.bioRxiv2023
36950906Supervised convex clustering.Biometrics2023
37200393Functional screening of lysosomal storage disorder genes identifies modifiers of alpha-synuclein neurotoxicity.PLoS Genet2023
35325552Correlation Imputation for Single-Cell RNA-seq.J Comput Biol2022
36191044Fast and interpretable consensus clustering via minipatch learning.PLoS Comput Biol2022
35086530A CRISPR toolbox for generating intersectional genetic mouse models for functional, molecular, and anatomical circuit mapping.BMC Biol2022
32931023HepatoScore-14: Measures of Biological Heterogeneity Significantly Improve Prediction of Hepatocellular Carcinoma Risk.Hepatology2021
33871358Downregulation of glial genes involved in synaptic function mitigates Huntington's disease pathogenesis.Elife2021
34734115MP-Boost: Minipatch Boosting via Adaptive Feature and Observation Sampling.Int Conf Big Data Smart Comput2021
34746376Minipatch Learning as Implicit Ridge-Like Regularization.Int Conf Big Data Smart Comput2021
34744522Integrative Generalized Convex Clustering Optimization and Feature Selection for Mixed Multi-View Data.J Mach Learn Res2021
34278383Detection of Junctional Ectopic Tachycardia by Central Venous Pressure.Artif Intell Med Conf Artif Intell Med (2005-)2021
32982130Dynamic Visualization and Fast Computation for Convex Clustering via Algorithmic Regularization.J Comput Graph Stat2020
34278382Correlation Imputation in Single cell RNA-seq using Auxiliary Information and Ensemble Learning.ACM BCB2020
33152028Quantifying cognitive resilience in Alzheimer's Disease: The Alzheimer's Disease Cognitive Resilience Score.PLoS One2020
31029870Tensor network factorizations: Relationships between brain structural connectomes and traits.Neuroimage2019
29617963Detecting hidden batch factors through data-adaptive adjustment for biological effects.Bioinformatics2018
30204756Genomic region detection via Spatial Convex Clustering.PLoS One2018
27163413Convex biclustering.Biometrics2017
28984207The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: summary and innovation in genomics.BMC Genomics2017
28984189The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools.BMC Bioinformatics2017
28983398A Review of Multivariate Distributions for Count Data Derived from the Poisson Distribution.Wiley Interdiscip Rev Comput Stat2017
27079753Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease.Alzheimers Dement2016
26568634TCGA2STAT: simple TCGA data access for integrated statistical analysis in R.Bioinformatics2016
27586041XMRF: an R package to fit Markov Networks to high-throughput genetics data.BMC Syst Biol2016
27147940Mixed Effects Models for Resampled Network Statistics Improves Statistical Power to Find Differences in Multi-Subject Functional Connectivity.Front Neurosci2016
27570498Graphical Models via Univariate Exponential Family Distributions.J Mach Learn Res2015
26304096Resting state functional MRI reveals abnormal network connectivity in neurofibromatosis 1.Hum Brain Mapp2015
26295449Local-aggregate modeling for big data via distributed optimization: Applications to neuroimaging.Biometrics2015
24489963On the reproducibility of TCGA ovarian cancer microRNA profiles.PLoS One2014
21353796Surgical outcomes and complications associated with presurgical tyrosine kinase inhibition for advanced renal cell carcinoma (RCC).Urol Oncol2013
24511361Regularized Partial Least Squares with an Application to NMR Spectroscopy.Stat Anal Data Min2013
24564637Molecular pathway identification using biological network-regularized logistic models.BMC Genomics2013
24443689IMAGING GENETICS VIA SPARSE CANONICAL CORRELATION ANALYSIS.Proc IEEE Int Symp Biomed Imaging2013
23986245Neural networks of colored sequence synesthesia.J Neurosci2013
23955777A Local Poisson Graphical Model for inferring networks from sequencing data.IEEE Trans Nanobioscience2013
34880705Inference with Transposable Data: Modeling the Effects of Row and Column Correlations.J R Stat Soc Series B Stat Methodol2012
21930672Sparse non-negative generalized PCA with applications to metabolomics.Bioinformatics2011
20438561Ribonucleotide reductase subunit M1 expression in resectable, muscle-invasive urothelial cancer correlates with survival in younger patients.BJU Int2010
26877823TRANSPOSABLE REGULARIZED COVARIANCE MODELS WITH AN APPLICATION TO MISSING DATA IMPUTATION.Ann Appl Stat2010
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Collaborators

Zhandong Liu
Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital
Co-authored papers 12
Ying-Wooi Wan
Baylor College of Medicine
Co-authored papers 5
John Nagorski
Rice University.
Co-authored papers 4
Manjari Narayan
Stanford University.
Co-authored papers 4
Juan Botas
Baylor College of Medicine
Co-authored papers 3
Hongtu Zhu
University of North Carolina
Co-authored papers 2
Zhongming Zhao
Center for Precision Health, The University of Texas Health Science Center at Houston
Co-authored papers 2
Joshua M Shulman
Baylor College of Medicine
Co-authored papers 2
Laura Caberlotto
The Microsoft Research University of Trento
Co-authored papers 1
Gustavo Stolovitzky
IBM T.J. Watson Research Center
Co-authored papers 1
Dehan Kong
University of Toronto
Co-authored papers 1
Paurush Praveen
Miltenyi Biotec B.V. & Co. KG
Co-authored papers 1
Philipp Senger
Fraunhofer Institute for Algorithms and Scientific Computing (SCAI)
Co-authored papers 1
Wenyi Wang
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
James Christopher Bare
Institute for Systems Biology
Co-authored papers 1
Qijia Jiang
Rice University
Co-authored papers 1
Jiajie Zhang
University of Texas Health Sciences Center
Co-authored papers 1
Venkatachalapathy S K Balagurusamy
IBM T.J. Watson Research Center - 218
Co-authored papers 1
Yuanfang Guan
University of Michigan ann arbor
Co-authored papers 1
Andrew Simmons
Institute of Psychiatry, King's College London
Co-authored papers 1
Beibei Chen
University of Texas Southwestern Medical Center
Co-authored papers 1
Arno Klein
Child Mind Institute
Co-authored papers 1
Lara M Mangravite
Children's Hospital Oakland Research Institute
Co-authored papers 1
Xia Shen
Usher Institute, University of Edinburgh
Co-authored papers 1
Jia Xu
First Clinical Medical School, Guangzhou University of Chinese Medicine
Co-authored papers 1
Roland Krause
University of Luxembourg
Co-authored papers 1
Thea Norman
Bill & Melinda Gates Foundation
Co-authored papers 1
Yen-Jen Oyang
Graduate Institute of Networking and Multimedia, National Taiwan University
Co-authored papers 1
Andrea Tateo
Universita degli Studi di Bari "A. Moro"
Co-authored papers 1
Cristian Caloian
Ontario Institute for Cancer Research
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Release 1.2