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Author Details

Panayiotis V Benos
University of Florida
1996
123
33
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
38037121Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup.J Am Med Inform Assoc2024
38037121Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup.J Am Med Inform Assoc2024
37611073Early Evidence of Chronic Obstructive Pulmonary Disease Obscured by Race-Specific Prediction Equations.Am J Respir Crit Care Med2024
37611073Early Evidence of Chronic Obstructive Pulmonary Disease Obscured by Race-Specific Prediction Equations.Am J Respir Crit Care Med2024
36778394The plasma degradome reflects later development of NASH fibrosis after liver transplant.bioRxiv2023
37679695Integrated unbiased multiomics defines disease-independent placental clusters in common obstetrical syndromes.BMC Med2023
37841841Prognostic Insights from Longitudinal Multicompartment Study of Host-Microbiota Interactions in Critically Ill Patients.Res Sq2023
37808745Prognostic Insights from Longitudinal Multicompartment Study of Host-Microbiota Interactions in Critically Ill Patients.medRxiv2023
37713508Integrated BATF transcriptional network regulates suppressive intratumoral regulatory T cells.Sci Immunol2023
37706427Transcriptional changes of the aging lung.Aging Cell2023
37961030LEF1 isoforms regulate cellular senescence and aging.Aging Cell2023
37866321Defining trophoblast injury patterns in the transcriptomes of dysfunctional placentas.Placenta2023
36778394The plasma degradome reflects later development of NASH fibrosis after liver transplant.bioRxiv2023
37340062The plasma degradome reflects later development of NASH fibrosis after liver transplant.Sci Rep2023
37085855Early events marking lung fibroblast transition to profibrotic state in idiopathic pulmonary fibrosis.Respir Res2023
36698131Distinct COPD subtypes in former smokers revealed by gene network perturbation analysis.Respir Res2023
37387140An intrinsically interpretable neural network architecture for sequence-to-function learning.Bioinformatics2023
36747873An intrinsically interpretable neural network architecture for sequence to function learning.bioRxiv2023
37250794The upper and lower respiratory tract microbiome in severe aspiration pneumonia.iScience2023
37502913LEF1 isoforms regulate cellular senescence and aging.bioRxiv2023
36846912Foxm1 regulates cardiomyocyte proliferation in adult zebrafish after cardiac injury.Development2023
37866321Defining trophoblast injury patterns in the transcriptomes of dysfunctional placentas.Placenta2023
37808745Prognostic Insights from Longitudinal Multicompartment Study of Host-Microbiota Interactions in Critically Ill Patients.medRxiv2023
37713508Integrated BATF transcriptional network regulates suppressive intratumoral regulatory T cells.Sci Immunol2023
37961030LEF1 isoforms regulate cellular senescence and aging.Aging Cell2023
37706427Transcriptional changes of the aging lung.Aging Cell2023
37841841Prognostic Insights from Longitudinal Multicompartment Study of Host-Microbiota Interactions in Critically Ill Patients.Res Sq2023
37502913LEF1 isoforms regulate cellular senescence and aging.bioRxiv2023
37679695Integrated unbiased multiomics defines disease-independent placental clusters in common obstetrical syndromes.BMC Med2023
37085855Early events marking lung fibroblast transition to profibrotic state in idiopathic pulmonary fibrosis.Respir Res2023
37387140An intrinsically interpretable neural network architecture for sequence-to-function learning.Bioinformatics2023
37250794The upper and lower respiratory tract microbiome in severe aspiration pneumonia.iScience2023
37340062The plasma degradome reflects later development of NASH fibrosis after liver transplant.Sci Rep2023
36698131Distinct COPD subtypes in former smokers revealed by gene network perturbation analysis.Respir Res2023
36747873An intrinsically interpretable neural network architecture for sequence to function learning.bioRxiv2023
36846912Foxm1 regulates cardiomyocyte proliferation in adult zebrafish after cardiac injury.Development2023
36357394Lipidomic signatures align with inflammatory patterns and outcomes in critical illness.Nat Commun2022
35464082Editorial: Advances in Mathematical and Computational Oncology.Front Physiol2022
36357394Lipidomic signatures align with inflammatory patterns and outcomes in critical illness.Nat Commun2022
35607614Essential Regression: A generalizable framework for inferring causal latent factors from multi-omic datasets.Patterns (N Y)2022
36778756Causal Discovery in High-dimensional, Multicollinear Datasets.Front Epidemiol2022
37395630Deep neural networks with knockoff features identify nonlinear causal relations and estimate effect sizes in complex biological systems.Gigascience2022
35607614Essential Regression: A generalizable framework for inferring causal latent factors from multi-omic datasets.Patterns (N Y)2022
35464082Editorial: Advances in Mathematical and Computational Oncology.Front Physiol2022
37395630Deep neural networks with knockoff features identify nonlinear causal relations and estimate effect sizes in complex biological systems.Gigascience2022
36778756Causal Discovery in High-dimensional, Multicollinear Datasets.Front Epidemiol2022
32841121A Pipeline for Integrated Theory and Data-Driven Modeling of Biomedical Data.IEEE/ACM Trans Comput Biol Bioinform2021
34128840Plasma 1,3-β-d-glucan levels predict adverse clinical outcomes in critical illness.JCI Insight2021
34282151Myofibroblast transcriptome indicates SFRP2<sup>hi</sup> fibroblast progenitors in systemic sclerosis skin.Nat Commun2021
34054117Neurological Complications Acquired During Pediatric Critical Illness: Exploratory "Mixed Graphical Modeling" Analysis Using Serum Biomarker Levels.Pediatr Crit Care Med2021
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Collaborators

Yingze Zhang
University of Pittsburgh
Co-authored papers 10
David L Corcoran
The University of North Carolina at Chapel Hill
Co-authored papers 8
Inga Siden-Kiamos
Institute of Molecular Biology and Biotechnology
Co-authored papers 6
Gary D Stormo
Washington University in St. Louis
Co-authored papers 6
Michael Ashburner
University of Cambridge
Co-authored papers 6
Robert D C Saunders
The Open University
Co-authored papers 5
Faraaz A Shah
University of Pittsburgh
Co-authored papers 5
Dana Borkova
Co-authored papers 4
Beatriz de Pablos
Universidad Autonoma de Madrid
Co-authored papers 4
Lee Murphy
Edinburgh Clinical Research Facility, University of Edinburgh
Co-authored papers 4
Kristina L Buschur
Co-authored papers 4
Edouard Cadieu
CNRS, University of Rennes 1
Co-authored papers 4
Concepcion Ferraz
INSERM U-, CNRS
Co-authored papers 4
Slava Bolshakov
Co-authored papers 4
Clark Glymour
Carnegie Mellon University
Co-authored papers 3
Bart Barrell
Wellcome Trust Sanger Institute
Co-authored papers 3
Frank C Sciurba
Co-authored papers 3
Maria Chikina
University of Pittsburgh
Co-authored papers 3
Jishnu Das
Co-authored papers 3
Ziv Bar-Joseph
Carnegie Mellon University
Co-authored papers 3
Sabah Kadri
Abbvie Inc., Genomics Research Center
Co-authored papers 2
Janine E Deakin
Co-authored papers 2
Bo Hu
Northwestern University Feinberg School of Medicine
Co-authored papers 2
Xinghua Lu
Co-authored papers 2
Craig P Hersh
Co-authored papers 2
Ted M Ross
Center for Vaccines and Immunology, University of Georgia
Co-authored papers 2
Mehdi Nouraie
Co-authored papers 2
Katherine Belov
Co-authored papers 2
Michael J Becich
University of Pittsburgh School of Medicine
Co-authored papers 2
Joseph D Ramsey
Carnegie Mellon University
Co-authored papers 2
Release 1.2