Author details

Full Name

Sarah Djebali

Affiliation

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37291142	A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling.		2023
37850035	TAGADA: a scalable pipeline to improve genome annotations with RNA-seq data.		2023
36909938	Enhancer/gene relationships: Need for more reliable genome-wide reference sets.		2023
33918852	Correlation Networks Provide New Insights into the Architecture of Testicular Steroid Pathways in Pigs.	Genes	2021
33911173	Author Correction: An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues.	Scientific Reports	2021
34262593	RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and -Regulation Analysis by Allele-Specific Expression in Livestock Species.	Frontiers in Genetics	2021
33235280	An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues.	Scientific Reports	2020
32759341	A limited set of transcriptional programs define major cell types.	Genome Res	2020
31120323	Analysis of pig transcriptomes suggests a global regulation mechanism enabling temporary bursts of circular RNAs.	RNA Biology	2019
31884969	Multi-species annotation of transcriptome and chromatin structure in domesticated animals.	BMC Biology	2019
28049418	ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.	BMC Genomics	2017
27943167	Erratum to: Bioinformatics Pipeline for Transcriptome Sequencing Analysis.	Methods in Molecular Biology	2017
27662878	Bioinformatics Pipeline for Transcriptome Sequencing Analysis.	Methods in Molecular Biology	2017
28073357	Long noncoding RNA repertoire in chicken liver and adipose tissue.	Genetics Selection Evolution	2017
28241135	An atlas of human long non-coding RNAs with accurate 5' ends.	Nature	2017
27716375	Erratum to: A benchmark for RNA-seq quantification pipelines.	Genome Biol	2016
27391956	Gene-specific patterns of expression variation across organs and species.	Genome Biol	2016
27107712	A benchmark for RNA-seq quantification pipelines.	Genome Biol	2016
27215799	Erratum to: A benchmark for RNA-seq quantification pipelines.	Genome Biol	2016
25954002	Human genomics. The human transcriptome across tissues and individuals.	Science	2015
25582907	Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression.	Nat Commun	2015
25164755	Comparative analysis of the transcriptome across distant species.	Nature	2014
25409824	A comparative encyclopedia of DNA elements in the mouse genome.	Nature	2014
24265505	Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia.	Genome Res	2014
23761436	Unravelling the hidden DNA structural/physical code provides novel insights on promoter location.	Nucleic Acids Res	2013
22238572	Evidence for transcript networks composed of chimeric RNAs in human cells.	PLoS One	2012
22889292	An encyclopedia of mouse DNA elements (Mouse ENCODE).	Genome Biol	2012
22955988	The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.	Genome Res	2012
22955978	Understanding transcriptional regulation by integrative analysis of transcription factor binding data.	Genome Res	2012
22955974	Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs.	Genome Res	2012
22955620	Landscape of transcription in human cells.	Nature	2012
22950368	Modeling gene expression using chromatin features in various cellular contexts.	Genome Biol	2012
18500348	Efficient targeted transcript discovery via array-based normalization of RACE libraries.	Nat Methods	2008
16925841	Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA.		2006