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Author Details

Ludwig Geistlinger
Center for Computational Biomedicine, Harvard Medical School
2008
35
19
PMIDPaper TitleJournal TitlePublished Year
37697152BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures.Nat Biotechnol2024
37697152BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures.Nat Biotechnol2024
36794911BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions.Bioinformatics2023
37624866Curated single cell multimodal landmark datasets for R/Bioconductor.PLoS Comput Biol2023
37609206Thyroid hormone rewires cortical circuits to coordinate body-wide metabolism and exploratory drive.bioRxiv2023
37208161RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor.Bioinformatics2023
36794911BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions.Bioinformatics2023
37624866Curated single cell multimodal landmark datasets for R/Bioconductor.PLoS Comput Biol2023
37609206Thyroid hormone rewires cortical circuits to coordinate body-wide metabolism and exploratory drive.bioRxiv2023
37208161RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor.Bioinformatics2023
35760813GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.Nat Commun2022
35760813GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.Nat Commun2022
33432175Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals.Nat Med2021
32026945Toward a gold standard for benchmarking gene set enrichment analysis.Brief Bioinform2021
33511368SIMON: Open-Source Knowledge Discovery Platform.Patterns (N Y)2021
33432175Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals.Nat Med2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
33511368SIMON: Open-Source Knowledge Discovery Platform.Patterns (N Y)2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
32026945Toward a gold standard for benchmarking gene set enrichment analysis.Brief Bioinform2021
31392308CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.Bioinformatics2020
31792435Orchestrating single-cell analysis with Bioconductor.Nat Methods2020
31827272Publisher Correction: Orchestrating single-cell analysis with Bioconductor.Nat Methods2020
32282230Reliable Analysis of Clinical Tumor-Only Whole-Exome Sequencing Data.JCO Clin Cancer Inform2020
32747365Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma.Cancer Res2020
33119407Multiomic Integration of Public Oncology Databases in Bioconductor.JCO Clin Cancer Inform2020
31392308CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.Bioinformatics2020
31827272Publisher Correction: Orchestrating single-cell analysis with Bioconductor.Nat Methods2020
31792435Orchestrating single-cell analysis with Bioconductor.Nat Methods2020
33119407Multiomic Integration of Public Oncology Databases in Bioconductor.JCO Clin Cancer Inform2020
32747365Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma.Cancer Res2020
32282230Reliable Analysis of Clinical Tumor-Only Whole-Exome Sequencing Data.JCO Clin Cancer Inform2020
30689687Waldron et al. Reply to "Commentary on the HMP16SData Bioconductor Package".Am J Epidemiol2019
30649166HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor.Am J Epidemiol2019
30689687Waldron et al. Reply to "Commentary on the HMP16SData Bioconductor Package".Am J Epidemiol2019
31076212Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study.Ann Epidemiol2019
30930938Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle.Front Genet2019
30930938Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle.Front Genet2019
31076212Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study.Ann Epidemiol2019
30649166HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor.Am J Epidemiol2019
29724912Micropatterning as a tool to identify regulatory triggers and kinetics of actin-mediated endothelial mechanosensing.J Cell Sci2018
30213987A comprehensive manually-curated compendium of bovine transcription factors.Sci Rep2018
30473781Orchestrating a community-developed computational workshop and accompanying training materials.F1000Res2018
30084834Consensus on Molecular Subtypes of High-Grade Serous Ovarian Carcinoma.Clin Cancer Res2018
29945546Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits.BMC Genomics2018
29362391Widespread modulation of gene expression by copy number variation in skeletal muscle.Sci Rep2018
29724912Micropatterning as a tool to identify regulatory triggers and kinetics of actin-mediated endothelial mechanosensing.J Cell Sci2018
29945546Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits.BMC Genomics2018
30213987A comprehensive manually-curated compendium of bovine transcription factors.Sci Rep2018
30084834Consensus on Molecular Subtypes of High-Grade Serous Ovarian Carcinoma.Clin Cancer Res2018
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Collaborators

Levi Waldron
City University of New York School of Public Health
Co-authored papers 20
Marcel Ramos
Graduate School of Public Health and Health Policy, City University of New York
Co-authored papers 11
Ralf Zimmer
Ludwig-Maximilians-Universitat Munchen
Co-authored papers 9
Martin Morgan
Roswell Park Comprehensive Cancer Center
Co-authored papers 9
Vincent J Carey
Brigham and Women's Hospital, Harvard Medical School
Co-authored papers 7
Nicola Segata
University of Trento
Co-authored papers 6
Lucas Schiffer
Boston University
Co-authored papers 5
Rimsha Azhar
City University of New York School of Public Health
Co-authored papers 5
Gergely Csaba
Ludwig-Maximilians-Universitat Munchen
Co-authored papers 4
Curtis Huttenhower
Broad Institute of MIT and Harvard
Co-authored papers 4
Sehyun Oh
Graduate School of Public Health and Health Policy, City University of New York
Co-authored papers 4
Benjamin Haibe-Kains
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 3
Chloe Mirzayi
City University of New York School of Public Health
Co-authored papers 3
Francesco Beghini
University of Trento
Co-authored papers 3
Susan R Davis
Co-authored papers 3
Sean Davis
Johns Hopkins School of Medicine, National Cancer Institute, Princeton University, University of Colorado Anschutz Medical Campus, University of Pittsburgh, University of Washington
Co-authored papers 3
Heidi E Jones
City University of New York Institute of Implementation Science and Population Health
Co-authored papers 2
Aedin C Culhane
Dana-Farber Cancer Institute & Harvard School of Public Health
Co-authored papers 2
Federico Marini
Co-authored papers 2
Herv?? Pag??s
Fred Hutchinson Cancer Research Center
Co-authored papers 2
Stephanie C Hicks
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 2
Audrey Renson
New York University Grossman School of Medicine
Co-authored papers 2
H-Erich Wichmann
Co-authored papers 2
Wolfgang Huber
Technische Universitat Munchen
Co-authored papers 2
Christian Gieger
German Research Center for Cardiovascular Disease (DZHK)
Co-authored papers 2
Kelly B Eckenrode
Graduate School of Public Health and Health Policy, City University of New York
Co-authored papers 2
Raphael Gottardo
Fred Hutchinson Cancer Center
Co-authored papers 2
Markus Riester
Novartis Institutes for BioMedical Research
Co-authored papers 2
Nitesh Turaga
The University of Melbourne
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Tim D Spector
King's College London
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Release 1.2