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Author Details

Mark Achtman
Warwick Medical School, University of Warwick
1971
201
79
PMIDPaper TitleJournal TitlePublished Year
35989608Genomic population structures of microbial pathogens.Philos Trans R Soc Lond B Biol Sci2022
35989609EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations.Philos Trans R Soc Lond B Biol Sci2022
33430919BlastFrost: fast querying of 100,000s of bacterial genomes in Bifrost graphs.Genome Biol2021
33823553HierCC: a multi-level clustering scheme for population assignments based on core genome MLST.Bioinformatics2021
34570761Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature.PLoS Genet2021
34161258<i>Helicobacter pylori</i>'s historical journey through Siberia and the Americas.Proc Natl Acad Sci U S A2021
32726198A publicly accessible database for Clostridioides difficile genome sequences supports tracing of transmission chains and epidemics.Microb Genom2020
31809257The EnteroBase user's guide, with case studies on <i>Salmonella</i> transmissions, <i>Yersinia pestis</i> phylogeny, and <i>Escherichia</i> core genomic diversity.Genome Res2020
32094538Emergence of human-adapted Salmonella enterica is linked to the Neolithization process.Nat Ecol Evol2020
33085727Correction: Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica.PLoS Pathog2020
33012228Metagenomics of the modern and historical human oral microbiome with phylogenetic studies on <i>Streptococcus mutans</i> and <i>Streptococcus sobrinus</i>.Philos Trans R Soc Lond B Biol Sci2020
29621240A genomic overview of the population structure of Salmonella.PLoS Genet2018
30049790GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens.Genome Res2018
30033331Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia.Curr Biol2018
30138580Principles of Systems Biology, No. 31.Cell Syst2018
27555304What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B.mBio2016
27534956How old are bacterial pathogens?Proc Biol Sci2016
25768799The role of China in the global spread of the current cholera pandemic.PLoS Genet2015
26274924Formal Comment to Pettengill: The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence.PLoS One2015
25848958Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe.Nat Commun2015
24274459The ubiquitous nature of Listeria monocytogenes clones: a large-scale Multilocus Sequence Typing study.Environ Microbiol2014
25521852Distinct genealogies for plasmids and chromosome.PLoS Genet2014
25092320Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever.Proc Natl Acad Sci U S A2014
24753568Parallel independent evolution of pathogenicity within the genus Yersinia.Proc Natl Acad Sci U S A2014
24905600Genetic variations of live attenuated plague vaccine strains (Yersinia pestis EV76 lineage) during laboratory passages in different countries.Infect Genet Evol2014
23299977A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic.Genome Res2013
24068950Recent acquisition of Helicobacter pylori by Baka pygmies.PLoS Genet2013
23637636Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona.PLoS Genet2013
23507027Population structures in the SARA and SARB reference collections of Salmonella enterica according to MLST, MLEE and microarray hybridization.Infect Genet Evol2013
23271803Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis.Proc Natl Acad Sci U S A2013
22081385Genome sequences and phylogenetic analysis of K88- and F18-positive porcine enterotoxigenic Escherichia coli.J Bacteriol2012
23144721Transforming microbial genotyping: a robotic pipeline for genotyping bacterial strains.PLoS One2012
23042176Population genetic structure of 4,12:a:- Salmonella enterica strains from harbor porpoises.Appl Environ Microbiol2012
22737074Multilocus sequence typing as a replacement for serotyping in Salmonella enterica.PLoS Pathog2012
22589724Age of the association between Helicobacter pylori and man.PLoS Pathog2012
22623967CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections.PLoS One2012
22312053Insights from genomic comparisons of genetically monomorphic bacterial pathogens.Philos Trans R Soc Lond B Biol Sci2012
22258927Genomic analysis uncovers a phenotypically diverse but genetically homogeneous Escherichia coli ST131 clone circulating in unrelated urinary tract infections.J Antimicrob Chemother2012
21749778Salmonella enterica Serotype Typhi with nonclassical quinolone resistance phenotype.Emerg Infect Dis2011
22003999Revival of Seeliger's historical 'Special Listeria Culture Collection'.Environ Microbiol2011
21862477Molecular epidemiology of extraintestinal pathogenic Escherichia coli isolates from a regional cohort of elderly patients highlights the prevalence of ST131 strains with increased antimicrobial resistance in both community and hospital care settings.J Antimicrob Chemother2011
21829375Recombination and population structure in Salmonella enterica.PLoS Genet2011
21931876Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar.PLoS Negl Trop Dis2011
21876683A broad brush, global overview of bacterial sexuality.PLoS Genet2011
21951486Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing.Environ Microbiol2011
20061468Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium.J Bacteriol2010
21037571Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity.Nat Genet2010
20808891A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island.PLoS Genet2010
20949072Distinct clones of Yersinia pestis caused the black death.PLoS Pathog2010
20935094Evolution and population structure of Salmonella enterica serovar Newport.J Bacteriol2010
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Collaborators

Pasteurien College, Suzhou Medical College of Soochow University
Co-authored papers 19
Quadram Institute Bioscience
Co-authored papers 6
Wellcome Trust Sanger Institute
Co-authored papers 3
Warwick Medical School, University of Warwick
Co-authored papers 3
Wellcome Trust Sanger Institute
Co-authored papers 2
Max Planck Institute for Infection Biology
Co-authored papers 2
Princeton University
Co-authored papers 1
Rega Institute, Laboratory of Clinical and Evolutionary Virology
Co-authored papers 1
Big Data Institute, University of Oxford
Co-authored papers 1
and Clinical Immunology, Heinrich Heine University, University Hospital Dusseldorf
Co-authored papers 1
Institute of Functional Genomics, University of Regensburg
Co-authored papers 1
University Medical Center Gottingen
Co-authored papers 1
Co-authored papers 1
Zhongnan Hospital of Wuhan University
Co-authored papers 1
University of Oxford
Co-authored papers 1
University of Regensburg
Co-authored papers 1
University of Oxford
Co-authored papers 1
University of Padova
Co-authored papers 1
University of Cambridge
Co-authored papers 1
Broad Institute of Harvard and MIT
Co-authored papers 1
University of Illinois
Co-authored papers 1
Dana-Farber Cancer Institute
Co-authored papers 1
University of Regensburg
Co-authored papers 1
Broad Institute
Co-authored papers 1
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University of Birmingham
Co-authored papers 1
Edinburgh Clinical Research Facility, University of Edinburgh
Co-authored papers 1
University of Melbourne
Co-authored papers 1
From the ++College of Science, Northeastern University
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University of California berkeley
Co-authored papers 1