Author details

Full Name

Lorenz Wernisch

Affiliation

ORCID

Career Start Year

1997

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35183768	Image-Enhanced Endoscopy and Molecular Biomarkers Vs Seattle Protocol to Diagnose Dysplasia in Barrett's Esophagus.	Clinical Gastroenterology and Hepatology	2022
33108942	Imputation of Ordinal Outcomes: A Comparison of Approaches in Traumatic Brain Injury.	J Neurotrauma	2021
34992706	Efficient Real-Time Monitoring of an Emerging Influenza Pandemic: How Feasible?	Annals of Applied Statistics	2020
31608923	GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution.		2020
31050820	Transcriptomic profiling reveals three molecular phenotypes of adenocarcinoma at the gastroesophageal junction.	Int J Cancer	2019
31807307	Endoscopic measurement of gastric pH associates with persistent acid reflux in patients treated with proton-pump inhibitors for gastroesophageal reflux disease.	United European Gastroenterology Journal	2019
30257965	Metabolic regulation of pluripotency and germ cell fate through Î±-ketoglutarate.	EMBO J	2019
30052778	GPseudoRank: a permutation sampler for single cell orderings.		2019
30631389	Joining and splitting models with Markov melding.	Bayesian Analysis	2019
30985335	Development and Validation of Confocal Endomicroscopy Diagnostic Criteria for Low-Grade Dysplasia in Barrett's Esophagus.	Clinical and Translational Gastroenterology	2019
31335867	A meta-analysis of multiple matched aCGH/expression cancer datasets reveals regulatory relationships and pathway enrichment of potential oncogenes.	PLoS ONE	2019
27780826	A graphical model approach visualizes regulatory relationships between genome-wide transcription factor binding profiles.	Briefings in Bioinformatics	2018
30143660	Modelling of psychosocial and lifestyle predictors of peripartum depressive symptoms associated with distinct risk trajectories: a prospective cohort study.	Scientific Reports	2018
30423108	Branch-recombinant Gaussian processes for analysis of perturbations in biological time series.	Bioinformatics	2018
29036190	Clusternomics: Integrative context-dependent clustering for heterogeneous datasets.	PLoS Computational Biology	2017
28800724	A comparison of machine learning and Bayesian modelling for molecular serotyping.	BMC Genomics	2017
28703137	Platelet function is modified by common sequence variation in megakaryocyte super enhancers.	Nat Commun	2017
27600248	BTR: training asynchronous Boolean models using single-cell expression data.	BMC Bioinformatics	2016
26932771	An optimal stratified Simon two-stage design.	Pharmaceutical Statistics	2016
27318198	Pseudotime estimation: deconfounding single cell time series.		2016
27072986	The Discovery and Validation of Biomarkers for the Diagnosis of Esophageal Squamous Dysplasia and Squamous Cell Carcinoma.	Cancer Prevention Research	2016
24721904	The combination of autofluorescence endoscopy and molecular biomarkers is a novel diagnostic tool for dysplasia in Barrett's oesophagus.	Gut	2015
26581858	Investigating inter-chromosomal regulatory relationships through a comprehensive meta-analysis of matched copy number and transcriptomics data sets.	BMC Genomics	2015
26248086	Analysis of dysplasia in patients with Barrett's esophagus based on expression pattern of 90 genes.	Gastroenterology	2015
24516549	Non-replicating Mycobacterium tuberculosis elicits a reduced infectivity profile with corresponding modifications to the cell wall and extracellular matrix.	PLoS ONE	2014
24123673	Two novel pathway analysis methods based on a hierarchical model.		2014
24760698	Key regulators control distinct transcriptional programmes in blood progenitor and mast cells.	EMBO Journal	2014
24625410	STEME: a robust, accurate motif finder for large data sets.	PLoS ONE	2014
25148247	A meta-analysis of multiple matched copy number and transcriptomics data sets for inferring gene regulatory relationships.	PLoS ONE	2014
23243219	DNA methylation as an adjunct to histopathology to detect prevalent, inconspicuous dysplasia and early-stage neoplasia in Barrett's esophagus.	Clin Cancer Res	2013
23275551	Transcription factor and chromatin features predict genes associated with eQTLs.	Nucleic Acids Res	2013
23054952	Cell signalling regulates dynamics of Nanog distribution in embryonic stem cell populations.	Journal of the Royal Society Interface	2013
23737949	Testing the utility of an integrated analysis of copy number and transcriptomics datasets for inferring gene regulatory relationships.	PLoS ONE	2013
22998945	Displaying R spatial statistics on Google dynamic maps with web applications created by Rwui.	International Journal of Health Geographics	2012
22721266	Transcription factor co-localization patterns affect human cell type-specific gene expression.	BMC Genomics	2012
22859961	Comparison of methods for competitive tests of pathway analysis.	PLoS One	2012
21785132	STEME: efficient EM to find motifs in large data sets.	Nucleic Acids Research	2011
21457547	Creating web applications for spatial epidemiological analysis and mapping in R using Rwui.	Source Code for Biology and Medicine	2011
21453458	Empirical Bayesian models for analysing molecular serotyping microarrays.	BMC Bioinformatics	2011
22139419	New gene functions in megakaryopoiesis and platelet formation.	Nature	2011
20199667	Statistical model comparison applied to common network motifs.	BMC Systems Biology	2010
20356371	An integrated machine learning approach for predicting DosR-regulated genes in Mycobacterium tuberculosis.	BMC Systems Biology	2010
20074339	Variable structure motifs for transcription factor binding sites.	BMC Genomics	2010
19228925	A HaemAtlas: characterizing gene expression in differentiated human blood cells.	Blood	2009
19033257	Estimating translational selection in eukaryotic genomes.	Molecular Biology and Evolution	2009
19607663	Transcriptional programs: modelling higher order structure in transcriptional control.	BMC Bioinformatics	2009
18604288	Using temporal correlation in factor analysis for reconstructing transcription factor activities.	Eurasip Journal on Bioinformatics and Systems Biology	2008
18294384	A Bayesian Change point model for differential gene expression patterns of the DosR regulon of Mycobacterium tuberculosis.	BMC Genomics	2008
18078514	Quantification of global transcription patterns in prokaryotes using spotted microarrays.		2007
17464057	Lipid composition and transcriptional response of Mycobacterium tuberculosis grown under iron-limitation in continuous culture: identification of a novel wax ester.	Microbiology (United Kingdom)	2007