Author details

Full Name

Carles Pons

Affiliation

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37205480	K29-linked unanchored polyubiquitin chains disrupt ribosome biogenesis and direct ribosomal proteins to the Intranuclear Quality control compartment (INQ).	bioRxiv	2023
36217029	A proteome-scale map of the SARS-CoV-2-human contactome.	Nat Biotechnol	2023
37821946	Global analysis of suppressor mutations that rescue human genetic defects.	Genome Med	2023
34972989	Detection of Nuclear Biomarkers for Chromosomal Instability.	Methods in Molecular Biology	2022
34042294	Natural variants suppress mutations in hundreds of essential genes.	Mol Syst Biol	2021
33958448	Environmental robustness of the global yeast genetic interaction network.	Science	2021
33677561	Analysing the yeast complexome-the Complex Portal rising to the challenge.	Nucleic Acids Res	2021
32939983	Systematic analysis of bypass suppression of essential genes.	Mol Syst Biol	2020
32064787	Systematic genetics and single-cell imaging reveal widespread morphological pleiotropy and cell-to-cell variability.	Mol Syst Biol	2020
32296183	A reference map of the human binary protein interactome.	Nature	2020
32672454	Bioactivity Profile Similarities to Expand the Repertoire of COVID-19 Drugs.	J Chem Inf Model	2020
29674565	Systematic analysis of complex genetic interactions.	Science	2018
29269382	A framework for exhaustively mapping functional missense variants.	Mol Syst Biol	2017
28903051	Features of the Chaperone Cellular Network Revealed through Systematic Interaction Mapping.	Cell Rep	2017
28453651	A PanorOmic view of personal cancer genomes.	Nucleic Acids Res	2017
28582599	Mechanisms of suppression: The wiring of genetic resilience.	Bioessays	2017
27777270	A gene-centered C.Â elegans protein-DNA interaction network provides a framework for functional predictions.	Mol Syst Biol	2016
27811238	Exploring genetic suppression interactions on a global scale.	Science	2016
27708008	A global genetic interaction network maps a wiring diagram of cellular function.	Science	2016
26545110	Genetic Interactions Implicating Postreplicative Repair in Okazaki Fragment Processing.	PLoS Genet	2015
25897115	pyDockSAXS: protein-protein complex structure by SAXS and computational docking.	Nucleic Acids Res	2015
26430702	Transcription Factor Activity Mapping of a Tissue-Specific <i>in vivo</i> Gene Regulatory Network.	Cell Syst	2015
24569689	Neurons have an active glycogen metabolism that contributes to tolerance to hypoxia.	Journal of Cerebral Blood Flow and Metabolism	2014
24938290	Linking genetics to structural biology: complex heterozygosity screening with actin alanine scan alleles identifies functionally related surfaces on yeast actin.	G3 (Bethesda)	2014
23661696	pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring.	Bioinformatics	2013
26588765	Efficient Relaxation of Protein-Protein Interfaces by Discrete Molecular Dynamics Simulations.	J Chem Theory Comput	2013
26587639	Validated Conformational Ensembles Are Key for the Successful Prediction of Protein Complexes.	J Chem Theory Comput	2013
23990365	Glucose-6-phosphate-mediated activation of liver glycogen synthase plays a key role in hepatic glycogen synthesis.		2013
23934865	Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges.	Proteins	2013
23791784	Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network.	Mol Cell	2013
22113891	H-bond network optimization in protein-protein complexes: are all-atom force field scores enough?	Proteins	2012
22815362	Cell-Dock: high-performance protein-protein docking.	Bioinformatics	2012
21943333	Prediction of protein-binding areas by small-world residue networks and application to docking.	BMC Bioinformatics	2011
21214199	Scoring by intermolecular pairwise propensities of exposed residues (SIPPER): a new efficient potential for protein-protein docking.	J Chem Inf Model	2011
21464127	Processivity and subcellular localization of glycogen synthase depend on a non-catalytic high affinity glycogen-binding site.	Journal of Biological Chemistry	2011
21326236	Towards the prediction of protein interaction partners using physical docking.	Mol Syst Biol	2011
22001016	Community-wide assessment of protein-interface modeling suggests improvements to design methodology.	J Mol Biol	2011
19908381	Structural prediction of protein-RNA interaction by computational docking with propensity-based statistical potentials.	Pac Symp Biocomput	2010
19731373	Present and future challenges and limitations in protein-protein docking.	Proteins	2010
20804770	Structural characterization of protein-protein complexes by integrating computational docking with small-angle scattering data.	J Mol Biol	2010
20602351	Optimization of pyDock for the new CAPRI challenges: Docking of homology-based models, domain-domain assembly and protein-RNA binding.	Proteins	2010
19714207	Pushing structural information into the yeast interactome by high-throughput protein docking experiments.	PLoS Comput Biol	2009
26609992	On the Use of low-resolution Data to Improve Structure Prediction of Proteins and Protein Complexes.	J Chem Theory Comput	2009
19620099	FRODOCK: a new approach for fast rotational protein-protein docking.	Bioinformatics	2009
18165236	Hepatic glycogen synthesis in the absence of glucokinase: the case of embryonic liver.	Journal of Biological Chemistry	2008
18215279	Enhancing the prediction of protein pairings between interacting families using orthology information.	BMC Bioinformatics	2008
17876821	Prediction and scoring of docking poses with pyDock.	Proteins	2007
16845017	TSEMA: interactive prediction of protein pairings between interacting families.	Nucleic Acids Res	2006