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Author Details

Avi Ma'ayan
Icahn School of Medicine at Mount Sinai
2005
201
63
PMIDPaper TitleJournal TitlePublished Year
36869839lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs.Database (Oxford)2023
37771373Systems immunology-based drug repurposing framework to target inflammation in atherosclerosis.Nat Cardiovasc Res2023
37953774Dex-Benchmark: datasets and code to evaluate algorithms for transcriptomics data analysis.PeerJ2023
37082798Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells.Aging Cell2023
37460679Toxicology knowledge graph for structural birth defects.Commun Med (Lond)2023
36874981PrismEXP: gene annotation prediction from stratified gene-gene co-expression matrices.PeerJ2023
36869839lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs.Database (Oxford)2023
37166973Enrichr-KG: bridging enrichment analysis across multiple libraries.Nucleic Acids Res2023
37166966GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery.Nucleic Acids Res2023
37953774Dex-Benchmark: datasets and code to evaluate algorithms for transcriptomics data analysis.PeerJ2023
37771373Systems immunology-based drug repurposing framework to target inflammation in atherosclerosis.Nat Cardiovasc Res2023
37460679Toxicology knowledge graph for structural birth defects.Commun Med (Lond)2023
37082798Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells.Aging Cell2023
37166973Enrichr-KG: bridging enrichment analysis across multiple libraries.Nucleic Acids Res2023
37166966GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery.Nucleic Acids Res2023
36874981PrismEXP: gene annotation prediction from stratified gene-gene co-expression matrices.PeerJ2023
34694680Transcriptomic profiling of recessive dystrophic epidermolysis bullosa wounded skin highlights drug repurposing opportunities to improve wound healing.Exp Dermatol2022
36111352Age alters the oncogenic trajectory toward luminal mammary tumors that activate unfolded proteins responses.Aging Cell2022
35524556SigCom LINCS: data and metadata search engine for a million gene expression signatures.Nucleic Acids Res2022
36100892Transforming L1000 profiles to RNA-seq-like profiles with deep learning.BMC Bioinformatics2022
35945222Connecting omics signatures and revealing biological mechanisms with iLINCS.Nat Commun2022
35876555Getting Started with LINCS Datasets and Tools.Curr Protoc2022
35368424Gene and drug landing page aggregator.Bioinform Adv2022
36207580A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses.Commun Biol2022
36384094Gene set predictor for post-treatment Lyme disease.Cell Rep Med2022
35183110DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules.BMC Bioinformatics2022
35143610blitzGSEA: efficient computation of gene set enrichment analysis through gamma distribution approximation.Bioinformatics2022
34694680Transcriptomic profiling of recessive dystrophic epidermolysis bullosa wounded skin highlights drug repurposing opportunities to improve wound healing.Exp Dermatol2022
35085427Getting Started with the IDG KMC Datasets and Tools.Curr Protoc2022
35325615PPARdelta activation induces metabolic and contractile maturation of human pluripotent stem cell-derived cardiomyocytes.Cell Stem Cell2022
35368424Gene and drug landing page aggregator.Bioinform Adv2022
35524556SigCom LINCS: data and metadata search engine for a million gene expression signatures.Nucleic Acids Res2022
36111352Age alters the oncogenic trajectory toward luminal mammary tumors that activate unfolded proteins responses.Aging Cell2022
36207580A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses.Commun Biol2022
36100892Transforming L1000 profiles to RNA-seq-like profiles with deep learning.BMC Bioinformatics2022
36384094Gene set predictor for post-treatment Lyme disease.Cell Rep Med2022
35945222Connecting omics signatures and revealing biological mechanisms with iLINCS.Nat Commun2022
35876555Getting Started with LINCS Datasets and Tools.Curr Protoc2022
35183110DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules.BMC Bioinformatics2022
35143610blitzGSEA: efficient computation of gene set enrichment analysis through gamma distribution approximation.Bioinformatics2022
35085427Getting Started with the IDG KMC Datasets and Tools.Curr Protoc2022
35325615PPARdelta activation induces metabolic and contractile maturation of human pluripotent stem cell-derived cardiomyocytes.Cell Stem Cell2022
33067313Connectivity Mapping Identifies BI-2536 as a Potential Drug to Treat Diabetic Kidney Disease.Diabetes2021
34019655KEA3: improved kinase enrichment analysis via data integration.Nucleic Acids Res2021
34074766Krüppel-like factor 6-mediated loss of BCAA catabolism contributes to kidney injury in mice and humans.Proc Natl Acad Sci U S A2021
33748796Appyters: Turning Jupyter Notebooks into data-driven web apps.Patterns (N Y)2021
34285421Publisher Correction: A systems approach identifies HIPK2 as a key regulator of kidney fibrosis.Nat Med2021
33795767Transcriptome analysis of human dermal fibroblasts following red light phototherapy.Sci Rep2021
33787872Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning.Database (Oxford)2021
33780170Gene Set Knowledge Discovery with Enrichr.Curr Protoc2021
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Collaborators

Zichen Wang
Icahn School of Medicine at Mount Sinai
Co-authored papers 45
Alexander Lachmann
Co-authored papers 41
Daniel J B Clarke
Icahn School of Medicine at Mount Sinai
Co-authored papers 27
Ravi Iyengar
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 22
Kathleen M Jagodnik
Massachusetts General Hospital Department of Psychiatry, Harvard Medical School.
Co-authored papers 22
Neil R Clark
Co-authored papers 21
Sherry L Jenkins
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 20
Denis Torre
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 17
John Cijiang He
Co-authored papers 17
Yan Kou
Co-authored papers 16
Maxim V Kuleshov
Co-authored papers 16
Edward Y Chen
Co-authored papers 16
Qiaonan Duan
Co-authored papers 15
Stephan C Sch??rer
Institute for Data Science and Computing, University of Miami
Co-authored papers 13
Ihor R Lemischka
Co-authored papers 13
Nicolas F Fernandez
Co-authored papers 13
Andrew D Rouillard
Co-authored papers 12
Amin R Mazloom
Co-authored papers 10
Peter Y Chuang
Co-authored papers 10
Minji Jeon
Korea University College of Medicine
Co-authored papers 10
Huilei Xu
Co-authored papers 10
Christopher M Tan
Co-authored papers 9
Dušica VidoviĿ
Co-authored papers 9
Ben D MacArthur
Co-authored papers 8
Sandeep K Mallipattu
Stony Brook School of Medicine
Co-authored papers 8
Ruth Dannenfelser
Co-authored papers 8
Joseph D Buxbaum
Icahn School of Medicine at Mount Sinai
Co-authored papers 7
Gregory W Gundersen
Co-authored papers 7
Alexandra B Keenan
Co-authored papers 7
Mario Medvedovic
Co-authored papers 6
Release 1.2