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Author Details

Mieczyslaw Torchala
University of Gdansk
2007
17
10
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36893332Why 6-Iodouridine Cannot Be Used as a Radiosensitizer of DNA Damage? Computational and Experimental Studies.J Phys Chem B2023
36893332Why 6-Iodouridine Cannot Be Used as a Radiosensitizer of DNA Damage? Computational and Experimental Studies.J Phys Chem B2023
32621226A Guide for Protein-Protein Docking Using SwarmDock.Methods Mol Biol2020
31697436Enhanced sampling of protein conformational states for dynamic cross-docking within the protein-protein docking server SwarmDock.Proteins2020
32621226A Guide for Protein-Protein Docking Using SwarmDock.Methods Mol Biol2020
31697436Enhanced sampling of protein conformational states for dynamic cross-docking within the protein-protein docking server SwarmDock.Proteins2020
28200016IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.Bioinformatics2017
28200016IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.Bioinformatics2017
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
27122118Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.Proteins2016
26231283Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.J Mol Biol2015
26231283Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.J Mol Biol2015
24573482Predicting the structure of protein-protein complexes using the SwarmDock Web Server.Methods Mol Biol2014
24580272Output-input ratio in thermally fluctuating biomolecular machines.Phys Rev E Stat Nonlin Soft Matter Phys2014
24573482Predicting the structure of protein-protein complexes using the SwarmDock Web Server.Methods Mol Biol2014
24580272Output-input ratio in thermally fluctuating biomolecular machines.Phys Rev E Stat Nonlin Soft Matter Phys2014
23343604SwarmDock: a server for flexible protein-protein docking.Bioinformatics2013
24079540The scoring of poses in protein-protein docking: current capabilities and future directions.BMC Bioinformatics2013
24039569Characterizing changes in the rate of protein-protein dissociation upon interface mutation using hotspot energy and organization.PLoS Comput Biol2013
24261882RaTrav: a tool for calculating mean first-passage times on biochemical networks.BMC Syst Biol2013
23900714A Markov-chain model description of binding funnels to enhance the ranking of docked solutions.Proteins2013
23843247Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.Proteins2013
23343604SwarmDock: a server for flexible protein-protein docking.Bioinformatics2013
24079540The scoring of poses in protein-protein docking: current capabilities and future directions.BMC Bioinformatics2013
24039569Characterizing changes in the rate of protein-protein dissociation upon interface mutation using hotspot energy and organization.PLoS Comput Biol2013
24261882RaTrav: a tool for calculating mean first-passage times on biochemical networks.BMC Syst Biol2013
23900714A Markov-chain model description of binding funnels to enhance the ranking of docked solutions.Proteins2013
23843247Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.Proteins2013
19048310Search for inhibitors of aminoacyl-tRNA synthases by virtual click chemistry.J Mol Model2009
19048310Search for inhibitors of aminoacyl-tRNA synthases by virtual click chemistry.J Mol Model2009
18422356Underdamped vibrations control the primary electron transfer in photosynthesis at low temperatures.J Phys Chem B2008
18422356Underdamped vibrations control the primary electron transfer in photosynthesis at low temperatures.J Phys Chem B2008
17882381IA, database of known ligands of aminoacyl-tRNA synthetases.J Comput Aided Mol Des2007
17882381IA, database of known ligands of aminoacyl-tRNA synthetases.J Comput Aided Mol Des2007
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Collaborators

Paul A Bates
The Francis Crick Institute
Co-authored papers 12
Iain H Moal
GSK Medicines Research Centre
Co-authored papers 9
Juan Fern??ndez-Recio
Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)
Co-authored papers 7
Raphael A G Chaleil
Francis Crick Institute
Co-authored papers 6
Zhiping Weng
University of Massachusetts Medical School
Co-authored papers 4
Thom Vreven
Visterra Inc.
Co-authored papers 4
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 4
Panagiotis L Kastritis
Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg
Co-authored papers 3
Rudi Agius
Co-authored papers 3
Alexandre M J J Bonvin
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 3
Brian G Pierce
University of Maryland Institute for Bioscience and Biotechnology Research
Co-authored papers 3
Shoshana J Wodak
VIB-VUB Center for Structural Biology
Co-authored papers 2
Dima Kozakov
Stony Brook University
Co-authored papers 2
Sandor Vajda
Boston University
Co-authored papers 2
Jeffrey J Gray
Johns Hopkins University
Co-authored papers 2
Hasup Lee
Seoul National University
Co-authored papers 2
Sanbo Qin
University of Illinois at Chicago
Co-authored papers 2
Juan Esquivel-Rodr??guez
Costa Rica Institute of Technology
Co-authored papers 2
Chaok Seok
Seoul National University
Co-authored papers 2
Miguel Romero-Durana
Pontificia Universidad Javeriana
Co-authored papers 2
Sameer Velankar
European Bioinformatics Institute
Co-authored papers 2
Chiara Pallara
Co-authored papers 2
David R Hall
Diamond Light Source Ltd, Harwell Science & Innovation Campus
Co-authored papers 2
Sheng-You Huang
Huazhong University of Science and Technology
Co-authored papers 2
Huan-Xiang Zhou
University of Illinois Chicago
Co-authored papers 2
Daisuke Kihara
Purdue University
Co-authored papers 2
Petr Popov
Skolkovo Institute of Science and Technology
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Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
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Release 1.2