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Author Details

Fan Zheng
University of California San Diego
2014
20
11
Dexter Pratt (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37220749A multi-scale map of protein assemblies in the DNA damage response.Cell Syst2023
37786690Desmosome mutations impact the tumor microenvironment to promote melanoma proliferation.bioRxiv2023
35169113Design of a mutation-integrated trimeric RBD with broad protection against SARS-CoV-2.Cell Discov2022
33413539HiDeF: identifying persistent structures in multiscale 'omics data.Genome Biol2021
33930332Functional landscape of SARS-CoV-2 cellular restriction.Mol Cell2021
34591613Interpretation of cancer mutations using a multiscale map of protein systems.Science2021
34591612A protein interaction landscape of breast cancer.Science2021
34819669A multi-scale map of cell structure fusing protein images and interactions.Nature2021
34591642A protein network map of head and neck cancer reveals PIK3CA mutant drug sensitivity.Science2021
32587977Identifying persistent structures in multiscale 'omics data.bioRxiv2020
33095781Multiscale community detection in Cytoscape.PLoS Comput Biol2020
30878356DDOT: A Swiss Army Knife for Investigating Data-Driven Biological Ontologies.Cell Syst2019
29218918Annotating gene sets by mining large literature collections with protein networks.Pac Symp Biocomput2018
30031618Lipid accumulation inhibitory activities of novel isoxazole-based chenodeoxycholic acids: Design, synthesis and preliminary mechanism study.Bioorg Med Chem Lett2018
28552940Sequence statistics of tertiary structural motifs reflect protein stability.PLoS One2017
28236239Simplifying the Design of Protein-Peptide Interaction Specificity with Sequence-Based Representations of Atomistic Models.Methods Mol Biol2017
27094296Design of Specific Peptide-Protein Recognition.Methods Mol Biol2016
25451599Computational design of selective peptides to discriminate between similar PDZ domains in an oncogenic pathway.J Mol Biol2015
25914055Tertiary structural propensities reveal fundamental sequence/structure relationships.Structure2015
24952313Design and designability of protein-based assemblies.Curr Opin Struct Biol2014
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Collaborators

Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 12
Dexter Pratt (CM4AI)
UC San Diego
Co-authored papers 7
Christopher Churas (CM4AI)
University of California San Diego
Co-authored papers 6
Jisoo Park
University of California San Diego san francisco
Co-authored papers 5
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 4
Minkyu Kim
University of California san francisco
Co-authored papers 4
Jason F Kreisberg
University of California San Diego
Co-authored papers 4
Michael Ku Yu
University of California San Diego
Co-authored papers 3
Keiichiro Ono
university of california san diego
Co-authored papers 3
Marcus R Kelly
Stanford University School of Medicine
Co-authored papers 3
Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 3
Jianzhu Ma
Purdue University
Co-authored papers 3
Katherine Licon
University of California San Diego
Co-authored papers 3
Kari A Herrington
Center for Advanced Light Microscopy, University of California san francisco
Co-authored papers 3
John Lee
University of California San Diego
Co-authored papers 2
Michael J McGregor
J. David Gladstone Institutes
Co-authored papers 2
Rudolf T Pillich
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Co-authored papers 2
Mehdi Bouhaddou
J. David Gladstone Institutes
Co-authored papers 2
Helene Foussard
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 2
Anton Kratz
University of California San Diego san francisco
Co-authored papers 2
Margaret Soucheray
J. David Gladstone Institutes
Co-authored papers 2
She Zhang
University of Pittsburgh School of Medicine
Co-authored papers 2
Ivet Bahar
Laufer Center for Physical and Quantitative Biology, Stony Brook University
Co-authored papers 2
Kyumin Kim
Inje Institute of Pharmaceutical Sciences and Research, Inje University
Co-authored papers 2
Jing Chen
College of Bioinformatics Science and Technology, Harbin Medical University
Co-authored papers 2
Beril Tutuncuoglu
University of California san francisco
Co-authored papers 2
Jorge Silvio Gutkind
Moores Cancer Center, University of California San Diego
Co-authored papers 2
Neil E Bhola
Zai Lab (US) LLC
Co-authored papers 1
Edward W Huang
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